BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482210
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32740.1 | Symbols: ATGT13, GT13 | galactosyltransferase 13 ... 1975 0.0
> AT2G32740.1 | Symbols: ATGT13, GT13 | galactosyltransferase 13
| chr2:13886826-13888232 FORWARD LENGTH=1407
Length=1407
Score = 1975 bits (1069), Expect = 0.0
Identities = 1303/1416 (92%), Gaps = 15/1416 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAATTCAATCCCAAAAAGAAAAAG-CTTGTG-AGTAAACGAGCTCTAAAGCTTT 58
||||| ||||||||||| |||||| ||||| | |||| || ||||||||||||||| |||
Sbjct 1 ATGGACAAATTCAATCCAAAAAAGGAAAAGAC-TGTGAAG-AAACGAGCTCTAAAGGTTT 58
Query 59 TGA-TAGAAATCTTACCAACACCTTTGTTCTCTATGCTCTTTCTGATTCACATCAATCAA 117
||| | ||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||
Sbjct 59 TGACT-GAAATCTCACCAACACCTTTGTTCTCCATGCTCTTTCTGCTTCACATCAGTCAA 117
Query 118 ATCGCAAACTATCTCTTTCTTTCCGACAAAGAAACCCTAAATATCACTGTGAGGGCTATG 177
|| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 118 ATTGCAACCTATCTCTCTCTTTCCGACAAAGAAACCCTAAATATCACTGTGAAAACTAAA 177
Query 178 CAAGGAGGGATAGATACTTGCGCCGGAAGGTATGTGTATATGCACGATCTTCCAAGCAGA 237
||||| || | ||||||||| |||||||| || |||||||||||| ||||||||||||||
Sbjct 178 CAAGGTGGAACAGATACTTGTGCCGGAAGATACGTGTATATGCACAATCTTCCAAGCAGA 237
Query 238 TTCAAC-AACGATCTGATCAAGAGCTGTGAAGCATACATCGAATTACGAAATAAGTGTAA 296
|||||| || |||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 238 TTCAACGAA-GATCTGATCAAGAGCTGTGAGGCATACATCGAATTACGAAACAAATGTAA 296
Query 297 GTACCTTGTTAACTCTGGCTTCGGTCCACGGATTTTGGAGGACA-AACATAACCATACCA 355
||||||| |||||||||||||||||||||| || |||||||| | | |||||||||||||
Sbjct 297 GTACCTTATTAACTCTGGCTTCGGTCCACGTATCTTGGAGGA-AGATCATAACCATACCA 355
Query 356 CTCAAGTCTTAACAATCAAAACCGGTTCTTGGTACTATACGAACCAATTCATGCTCGAGG 415
||| ||||||||| ||| | ||||||||||||||||| || |||||||||||||| ||||
Sbjct 356 CTCGAGTCTTAACCATCGAGACCGGTTCTTGGTACTACACAAACCAATTCATGCTTGAGG 415
Query 416 TTATCTTCCGAGAGAAAATGAGACACTATGAGTGTTTGACCAACGATTCTTCCCTTTCTT 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 TTATCTTCCGAGAGAAAATGAGACACTACGAGTGTTTGACCAACGATTCTTCCCTTTCTT 475
Query 476 CTGCGGTTTTTGTCCCGTTCTATGCTGGATTCGATGTGAGACGCTTTTGGGGATACAACG 535
| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CCGTGGTTTTCGTCCCGTTTTATGCTGGATTCGATGTGAGACGCTTTTGGGGATACAACG 535
Query 536 TGAAGCTCAGAGACGAACTTGGTGAAGATCTAGCTCAATGGCTTAGGGAGAGACCAGAGT 595
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTAAGCTGAGAGACGAACTTGGTGAAGATCTAGCTCAATGGCTTAGGGAGAGACCAGAGT 595
Query 596 GGAAGAAAATGTACGGACGAGATCACTTCTTTGTCACGGGACGGGTTGGTCGGGATTTTA 655
||| ||||||||| ||||||||||| |||||||||||||||||||||||| | ||||| |
Sbjct 596 GGAGGAAAATGTATGGACGAGATCATTTCTTTGTCACGGGACGGGTTGGTAGAGATTTCA 655
Query 656 GAAGGGTTACTGATCAAGATTCAGATTGGGGAAACAAACTGATGCGGTTGCCTGAATTCA 715
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 656 GGAGGGTTACAGATCAAGATTCGGATTGGGGAAACAAACTGATGCGGTTGCCTGAATTCG 715
Query 716 AGAACATAACGATGTTATCGATTGAGACGAATTCTTGGAGCAACGAGTTTGCGGTTCCTT 775
|||||||||| |||||||| |||||||| |||||| |||| |||||||||||||||||||
Sbjct 716 AGAACATAACTATGTTATCCATTGAGACAAATTCTAGGAGTAACGAGTTTGCGGTTCCTT 775
Query 776 ATCCAACTTACTTCCATCCAAAGAGTCGCACCGAGGTTAAGAGATGGCAGATGCAAGTGA 835
|||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 776 ATCCAACTTATTTCCATCCAAAGAGCCGAACCGAGGTTAAGAGATGGCAGAGGCAAGTGA 835
Query 836 GGATGATGCAGAGACGATACTTGTTCTCGTTTGTCGGAGCTAATCGGCCCGAAATGAAGG 895
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 836 CGATGATGCAGAGACGATACTTGTTCTCGTTTGTCGGAGCTAATCGGCCAAAAATGGAGG 895
Query 896 AATCTATAAGAGGGGAGATTATAAGACAGTGCCTTGCATCACAAGGAAGTTGCAAATTTC 955
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 AATCTATTAGAGGTGAGATTATAAGACAGTGCCTTGCATCACAAGGAAGATGCAAATTTC 955
Query 956 TTGATTGTGATACATCGACTAAAGACTGTAGTGATCCGGTTAAGGTAATGGAGGTGTTCC 1015
|||||||||| ||||||| |||||||||||||||||||||||||||| |||| || || |
Sbjct 956 TTGATTGTGACACATCGAGTAAAGACTGTAGTGATCCGGTTAAGGTAGTGGAAGTTTTTC 1015
Query 1016 AAGATTCGGTTTTCTGTTTACAACCACCAGGAGATACACCTACTCGGAGATCGACATTTG 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1016 AAGATTCGGTTTTCTGTTTACAACCACCAGGAGATACACCTACTCGGAGATCAACATTTG 1075
Query 1076 ATTCGATTTTAGCCGGTTGTATACCGGTTTTATTTAGCCCGGATTCTGTTTACAACCAGT 1135
||||||||||||||||||||||||||||||| |||||| ||||| || || |||||||
Sbjct 1076 ATTCGATTTTAGCCGGTTGTATACCGGTTTTCTTTAGCGTTGATTCGGTCTATAACCAGT 1135
Query 1136 ACAAGTGGTATTTTCCAAAAGATCATACCAAGTATTCGGTTTACATTTCGGAGGAAGATG 1195
|||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||
Sbjct 1136 ACAAGTGGTATTTTCCAAAAGATCGTACCAAGTACTCGGTTTACATCGCGGAGGAAGGTG 1195
Query 1196 TGAAAAATGGGAAGGTTAGTATTGAGAAGTTATTGGCTAGTATTATTAGTGAAGAGAGGA 1255
||||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 1196 TGAAAAAGGGGAAGGTTAGTATTGAGAAGTTATTGGCTA--ATG-TTAGTGAAGAGAAGA 1252
Query 1256 TTTTGAAG-ATGAGGAATGGGGTTGAGAAGATTATACCAAAGATAATCTATACAAAACCG 1314
||| ||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1253 TTTC-AAGGATGAGAAATGAGGTTGAGAAGATTATACCAAAGATAATTTATACAAAACCG 1311
Query 1315 GGGGAGGTTGGACCGGAAAAGATTGAAGATGCGTTTGAAATTGCAGTGGCTAGGGTTCTT 1374
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1312 GGGGAGGTTGGACCGGAAAAGATTGAAGATGCATTTGAAATTGCAGTGGCTAGGGTGCTT 1371
Query 1375 GAGAGAGTGTCATTGTTCAAGATGACACGGATCTAG 1410
||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAGAGAGTGTCATTGTTCAAGATGACACGGATCTAG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5