BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482212
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32760.1 | Symbols: | unknown protein; Has 229 Blast hits t... 2468 0.0
> AT2G32760.1 | Symbols: | unknown protein; Has 229 Blast hits
to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa
- 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr2:13891791-13894724 FORWARD
LENGTH=1837
Length=1837
Score = 2468 bits (1336), Expect = 0.0
Identities = 1687/1847 (91%), Gaps = 62/1847 (3%)
Strand=Plus/Plus
Query 1 CTGACCCGGAAGTTTCTAATCTC-CATCTCTTTCCTAAAGTAACAAACTTTAAAATTTCT 59
||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1 CTGACCCGGAAGTTTCTAATCTCTC-TCTCTTTCCTAAAGTAACAAACTTTAAATTTTCT 59
Query 60 GCAAAATCGAACAACG-A--ATCAGCCTGAGAAGCTTCTTCAATCCTG------------ 104
|||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 60 GCAAAATCGAACAACGAATCATCAGCCCGAGAAGCTTCTTCAATCCTGTAAATTTTTCAT 119
Query 105 --T--GTATCAATCTCTCATTTCTCC-GATTCGTTTCTAGCTTTCGTTTCTCTTCCTTTG 159
| ||| |||||||||||||| || ||||||||||| |||| | || |||||||||||
Sbjct 120 TCTACGTACCAATCTCTCATTTC-CCAGATTCGTTTCTTGCTTCCATTGCTCTTCCTTTG 178
Query 160 AACCAATCATCATCTCCAGGTGATCGGTTTTCTT-AAAGTTAGGGTTTTTGATTGTTCTA 218
|||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||
Sbjct 179 TACCAATCATCATCTCCAGGTGATCGG-TTTATTAAAAATTAGGGTTTTTGATTGTTCTA 237
Query 219 ATCCGATCTCTCGGTTCCGTTAAGATTGGTGATGAAATTCGAGGCGTGATATGAAAAGAT 278
|||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 238 ATCCGATCTCTCGGTTCCTTTAAGATTGATGATGAATTTCGAAGCGTGATATGAAAAGAT 297
Query 279 CTGGAGACTTGATGCCAGAACTTGCGTTGCGTGGGTTCCGAGATCATTGTTGATGGAAGG 338
||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 298 CTGAAGACTTGATGTCAGAACTTGCGTTGCGTGGGTTCCGAGATAATTGTTGATGGAAAG 357
Query 339 AGAATCAGAGAGAAGTTTGTCAGAAAATTTGAGAAGAAGCGATCGAGAAGATGTGAAGAT 398
|| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 AGTATCAGAGCGAAGTTTGTCAGAAAATTTGAGAAGAAGCGATCGAGAAGATGGGAAGAT 417
Query 399 TATAGAATGGGAAGAATTTGACCATGAGCTCACGAGGTTATGGAGTCTTTCTTCTGCTCT 458
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
Sbjct 418 TATAGAATGGGAAGAATTCGACCATGAGCTTACGAGGTTATGGAGTCTTTCTTCTGCTAT 477
Query 459 GAAATTAGCAACAGAGAAGAAGCAAATCCTGCAGCCCAAACTTGAGTCTCTTATTCAGGT 518
||||||||| ||||||| ||| ||||||||||| || |||||||||||||||||||||||
Sbjct 478 GAAATTAGCCACAGAGAGGAAACAAATCCTGCAACCGAAACTTGAGTCTCTTATTCAGGT 537
Query 519 TAGTACTGAATCATTGAGACGCACTAATGAACTTGAAGAAATGCGCCAGAGGCTGGAAGC 578
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 538 TAGTACTGAATCATTGAGACGCACTAATGAACTTGAAGAAATGCGTCAGAGGCTTGAAGC 597
Query 579 AAGAAAATTGCTGGTGGACAAGACATCAATTGCTTGCAAAGTTACTGAGCAGGATGTTAT 638
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 AAGAAAATTGTTGGTGGACAAGACATCAGTTGCTTGCAAAGTTACTGAGCAGGATGTTAA 657
Query 639 AAAGAAAGAGGATAATCTTAGTACAGAAGTGAGATCTTTGCTAGTAGGCGGAACAACTCT 698
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 AAAGAAAGAGGAGAATCTTAGTACAGAAGTGAGGTCTTTGCTAGTAGGCGGAACAACTCT 717
Query 699 TTCCATTGCTAAAAGTAAATTGCAGGAATCAAACTGCCAGCTAGAAGGAGAGAGTGGTTA 758
||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 718 TTCGATCGCTAAAAGCAAATTGCAGGAATCAAACTGCCAACTAGAAGGAGAAAGTGGTTA 777
Query 759 TGCACATTTAAAGACTGTAACGAATAAGCTGAGAAAGAGGCAGCAGTTCATGATATCTCA 818
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 TGCACATTTAAAGATTGTAACGAATAAGCTGAGAAAGAGGCAGCAGTTCATGGTATCTCA 837
Query 819 AGTTTCATTTATCTATCCCTTGAAGATTGAGGCTGGACCTTCACAAGACCAAGAACTGGA 878
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 AGTTTCATTTATCTATCCCTTGAAGATTGAAGCTGGACCTTCACAAGACCAAGAACTGGA 897
Query 879 ATCATTTCCTGGTGGCAGTAGATTAGTAGGGACTAAGCCTCTGAGTCAAGGATCCGTGAG 938
|||||||||||||||||||||| | |||| ||||||||||||||||||||||| |||||
Sbjct 898 ATCATTTCCTGGTGGCAGTAGA-T--TAGGAACTAAGCCTCTGAGTCAAGGATCTGTGAG 954
Query 939 AATTCTGGGGTTGCCTTTTAGTATGGCCCCGTTTACAAGGATGAGCTTCTTCACTGACAA 998
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 955 AATTCTGGGGTTGCCTTTTAGTATGGCCCCGTTTACAAAGATGAGCTTCTTCACCGACAA 1014
Query 999 GAAAGAAGTTCAGAAGTCGGCAACTGCCCTAGGATATGTAGCCCATGCTGTGTCCCTAAT 1058
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1015 GAAAGAAGTTCAGAAGTCTGCAACTGCCCTAGGATATGTAGCCCATGCCGTGTCACTAAT 1074
Query 1059 AGCTCCTTACTTGAGAATGCCTATTCGTTATCCTTTGCT-CCTAGGTGGTTCCAAAACAT 1117
|||||||||||||||| |||| ||||||||||||||| | ||| || |||||||||||||
Sbjct 1075 AGCTCCTTACTTGAGAGTGCCAATTCGTTATCCTTTG-TGCCTGGGGGGTTCCAAAACAT 1133
Query 1118 ACATTCGAGACTATGCACCTTATATTGAGCCTTCACCATCAGACATGTCTCCGATTACCA 1177
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACATTCGAGACTATGCACCTTACATTGAGCCTTCACCATCAGACATGTCTCCGATTACCA 1193
Query 1178 CGCTTTCCCAAAAT-TCTAACTTTGTAGAGTTTCCTCTGTTTCTGGATGGTCAAGATACA 1236
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CGCTTTCCCAAAATAT-TAACTTTGTAGAGTTTCCTCTGTTTCTGGATGGTCAAGATACA 1252
Query 1237 ACACGAGCTGCCTACGCTGTCTTCTTATTAAACAAGAACATCGAGCAACTCCTGAACTTT 1296
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1253 ACACGAGCTGCCTATGCTGTCTTCTTACTAAACAAGAACATCGAGCAACTCTTGAACTTT 1312
Query 1297 GTTGGGGAAAATAGTCTAGGACCACGTCAGGTTCTAGCAAACCTGAAGGAGCTAATTCGA 1356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GTGGGGGAAAATAGTCTAGGACCACGTCAGGTTCTAGCAAACCTGAAGGAGCTAATTCGA 1372
Query 1357 ATCATCCAATCTCCAgattatatcgattatttatgatgatgacgatgatgattacgacaa 1416
|||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||
Sbjct 1373 ATCATCCAATCTCCAGATTATATCGATTATTTATGACGATGATGATGATGACGACGAAAA 1432
Query 1417 taatgatgatgatgaAGATATCGATCCTTTCCTTCTCACACATCTTCC-G-GT----GT- 1469
|||||| ||||||||||||||| |||| |||||||||||||||||||| | || ||
Sbjct 1433 TAATGACGATGATGAAGATATCAATCCATTCCTTCTCACACATCTTCCAGAGTTCCAGTG 1492
Query 1470 -CTCTTCTT-TTTCCTTGAATCATCTCAAGTCAGACACTTTGTGGAGGTaaaaaagtaaa 1527
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1493 TCTCTTCTTGTTTA-TTGAATCATCTCAAGTCAGACACTTTGTGGAGGTAAAAAAGTACA 1551
Query 1528 aaTTATTTATTTCGTTATAGAAATTTTAGACATGGAAATTCTCTTTAGGATGAGACTCCT 1587
||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AATAATTGATTTTGTTAGAGAAATTTTAGACATGGAAATTCTCTTTAGGATGAGACTCCT 1611
Query 1588 C-TCT--AGATGTGATGTTTTTGGTTTGGAGAGACAGACGATAAACGAAAAGCGTAGTCT 1644
| ||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1612 CCTCTCTAGATGTGATGTTTTTGGTTTGGAGAGACCGACGATAAACGAAA-GCTTAGTCT 1670
Query 1645 ATTATACAGttttttttttagttctttttt-tgttttccttttttt-tt-CC-TTC-TCT 1699
||||||||||| ||| || |||||| ||| || ||||||| || || || |||
Sbjct 1671 ATTATACAGTTCTTTCTTAAGTTCTAACAGCTGTATTAGTTTTTTTGTTTCCCTTTATCT 1730
Query 1700 TT--GTGCTAGTA-T-C-ATTTGAAATATGTTTGAATTTGTAAGTTAACAA-CAATGATG 1753
|| |||||||| | | ||||||||||||||||||||||||| || | | || ||
Sbjct 1731 TTTTGTGCTAGTTGTACCATTTGAAATATGTTTGAATTTGTAAC--AATGAGCC-TGTTG 1787
Query 1754 --GAGTCAGTACAATTTTCAACGTACTGTAGGAATGTGTAACGTGTG 1798
||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct 1788 TTGAGTCAGTACAATTTTCAACGTACTGTTGGAATACGAAACGTGTG 1834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88955365740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5