BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482215
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32770.3 | Symbols: PAP13, ATPAP13 | purple acid phosphatase... 2617 0.0
> AT2G32770.3 | Symbols: PAP13, ATPAP13 | purple acid phosphatase
13 | chr2:13895825-13898277 FORWARD LENGTH=1725
Length=1725
Score = 2617 bits (1417), Expect = 0.0
Identities = 1614/1708 (94%), Gaps = 17/1708 (1%)
Strand=Plus/Plus
Query 1 AAATGGTGGTAAAATGTACAATGTCGATGTCCTTTTTCGTCATTTTCGCTTCAACTGTTA 60
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 12 AAATGGTGGTAAAATATACAATGTCGATGTCCTTTTTCGTCATTTTCGCTTCTACTGTTA 71
Query 61 CTATCATCGTTCATGGTTTCCCTA-CGACGCTCGACGGTCCGCTTAACCCCGTGACTGCT 119
|||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||||
Sbjct 72 CTATCATCGTTCATGGTTTCCC-ATCGACACTCGACGGTCCGCTTAACCCCGTTACTGCT 130
Query 120 CCACTCGACCCGAATCTTAACCCGATTGCATTCGACTTGCCAGAATCCGACCCGAGTTTC 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 131 CCACTCGACCCGAATCTTAACCCGATTGCATTCGACTTACCAGAATCCGACCCGAGTTTC 190
Query 180 GTAAAACCCAATTCGGGGTTTCTTC--CCC-AACAGAtctctgtctctctctctTACAGC 236
|||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 191 GTAAAACCCATTTCGGAGTTTCTTCTTCCCGAACAGATCTCTGTCTCTCTCTCTTACAGC 250
Query 237 TTTGACTCCGTCTGGATTTCTTGGGTCACAGGGGATTACCAAATTGGTGAAGAAGATTCT 296
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 251 TTTGACTCCGTCTGGATTTCTTGGGTCACAGGGGAATACCAAATTGGTGAAAAAGATTCT 310
Query 297 GCACCTCTGGATCCTAATTGTGTGCAAAGCATAGTCCAATACCGTGAATTCGATGTCCGT 356
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 311 GCACCTCTGGATCCTAATTGTGTGCAAAGCATAGTTCAATACCGTGAATTCGATGTTCGT 370
Query 357 AGTACTATAAATAAAAATGCAACAGGCCATTCTATTGTTTATAACCAACAGTA-TCTTTC 415
|||||| || |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 371 CGTACTAGGAAGCAAAATGCAACAGGCCATTCTATTGTTTATAACCAACAGTATTC-TTC 429
Query 416 TGAGAATGGTCTCAAGAACTATACATCAGGTATCATCCACCATGTTCAACTCACAGGTCT 475
|||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 430 TGAGAATGGTTTCATGAACTATACTTCAGGCATCATTCACCATGTTCAACTCACAGGTCT 489
Query 476 TAAACCAAACACATTGTATCGATACCGATGTGGAGACCTGTCTTTATCAGCAATGAGCAA 535
|||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 490 TAAACCAAACACATTGTACCGATACCAATGCGGAGACCCGTCTTTATCAGCAATGAGCAA 549
Query 536 AGAGTATTACTTCAGGACAATGCCTAAGTCTACATCAGAGAATTACCCGCACAGAATCGT 595
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 550 AGAGTATTACTTCAGGACAATGCCTAAGTCTACATCAGAGAATTATCCACACAGAATCGT 609
Query 596 TGTGGCTGGAGATTTGGGTCTTACTTACAACACATCAA-TAGTTTTGACAAAGATTCTGT 654
|||||||||||||||||||||||||||||||||||||| | |||||| | |||||||
Sbjct 610 TGTGGCTGGAGATTTGGGTCTTACTTACAACACATCAACT-GTTTTGGGGCATATTCTGT 668
Query 655 CTAACCATCCTGATCTTGTGGTTTTAATTGGAGGATTCAGCTACGCGGATACTTATCTCG 714
|||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 669 CTAACCATCCAGATCTTGTGGTTTTACTTGGAGGATTCAGCTACGCTGATACTTATCTTG 728
Query 715 CGAATAACACTAAACTAGATTGTAGTTCTTGTCATTGTGAGAAAAACGGAACCAGTTCTA 774
||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 729 CGAATAAGACTAAACTAGATTGTAGTTCTTGTCATTGTGACCAAAATGGAACTAGTTCTG 788
Query 775 ATTGTGGTTCTTGTTATTCAAGTCGAGAAACTTATCAGCCTCGCTGGGATTATTGGGGAA 834
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 789 ATTGTGGTTCTTGTTATTCTAGTGGAGAAACTTATCAGCCTCGCTGGGATTATTGGGGAA 848
Query 835 GGTTCATGGAGCCACTTACAGCTAATGTTCCAACCATGATGGTAGCAGGAGAGCACGAGA 894
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 849 GGTTCATGGAGCCACTCACGGCTAATGTTCCAACCATGATGGTAGCAGGGGAGCACGAGA 908
Query 895 TTGAGCCGCAGACCGATAATAATCTGACATTCGCTGCATACAGTTCAAGATTCGCATTCC 954
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGAGCCGCAGACCGAGAATAATCTGACATTCGCTGCATACAGTTCAAGATTCGCATTCC 968
Query 955 CTTCAAACGAAAGCGGTTCTTTCTCACCATTATACTATTCCTTCAACGCGGGAGGAACTC 1014
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 969 CTTCAAACGAAAGCGGTTCTTTCTCACCATTATACTATTCTTTCAACGCGGGAGGAGCTC 1028
Query 1015 ATTTCATAGTCCTCAATTCATATACACCTTATGATAACTCATCTGATCAGTATATTTGGC 1074
|||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1029 ATTTCATAGTGCTCAATTCATACACACTTTATGATAACTCATCTGATCAGTATATTTGGC 1088
Query 1075 TTGAAAGTGACCTGAGT-ATCATAAACAGATCAGAAACTCCATGGGTGGTTGCAACTTGG 1133
||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TTGAAAGTGACCTGA-TCAAAATAAACAGATCAGAAACTCCATGGGTGGTTGCAACTTGG 1147
Query 1134 AGTCTTCCTTGGTACAGCACATTCAAAGGGCATTACAGAGAAGCTGAATCCATGAGGATA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1148 AGTCTTCCTTGGTACAGCACATTCAAAGGGCATTACAGAGAAGCTGAATCAATGAGGATT 1207
Query 1194 AATCTTGAAGACTTGCTCTATAGCTACCGAGTCGATATCATCTTCAATAGTCAGGTTGAT 1253
| ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 1208 CACCTTGAAGACTTGCTCTATAACTACCGAGTCGATATCGTCTTCAATAGTCATGTTGAT 1267
Query 1254 GCATATGAGAGATCAAACAGAGTCTACAACTAC-CTGTTAGACCAATGTGGCCCGGTTTA 1312
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1268 GCATATGAGAGATCAAACAGAGTCTACAACTACAC-GTTAGACCAATGTGGCCCGGTTTA 1326
Query 1313 TATAACAACCGGTGCAGGAGGAGCTGGGAAGCTGGAGACTCAGCATGTAGATGACCCAGG 1372
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1327 TATAACAACCGGTGCAGGAGGAGCTGGGAAGCTGGAGACTCAGCATGTAGACGACCCAGG 1386
Query 1373 AAACTGT-CCAGATCCTTCTCAGAACTACTCGTGCAGATCCAGTGGCTTTAACTTCACGT 1431
||| | | ||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1387 AAA-TATTCCAGATCCTTCTCAGAACTACTCGTGCAGATCCAGCGGCTTGAACTCCACGT 1445
Query 1432 TGGAGCCTGTAAACA-ATGAGACTTGTCGGGTTAAGCAGCCGGAGTATAGCGCATACAGA 1490
||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1446 TGGAGCCTGTAAA-AGATGAGACTTGTCCGGTTAAGCAGCCGGAGTATAGCGCATACAGA 1504
Query 1491 GAGAGCAGCTTCGGTTTCGGTATGCTAGAAGTGAAGAATGAGACGCATGCATTGTGGAGC 1550
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1505 GAAAGCAGCTTCGGTTTCGGTATACTAGAAGTGAAGAATGAGACGCATGCATTGTGGAGC 1564
Query 1551 TGGAACCGGAATCAAGACCTTTACTATCTCTCCGCCGACGTAATATATATTGTACGTCAG 1610
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1565 TGGAACCGGAATCAAGACCTGTACTATCTCGCCGCCGACGTAATACATATTGTACGTCAG 1624
Query 1611 CCTGAAATGTGCCCGGTTTGCAACTAAACCAAGTAGTTATACCTGTAGAGTTTACAACGT 1670
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1625 CCTGAAATGTGCTCGGTTTGCAACTAAACCAAGTAGTTATACCGGTAGATTTTATAACGT 1684
Query 1671 TCTACAGTTTACGTAGCCATTATCTATA 1698
||||||||||||||||||||||||||||
Sbjct 1685 TCTACAGTTTACGTAGCCATTATCTATA 1712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5