BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482222

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G32788.1 | Symbols:  | Encodes a Rapid ALkalinization Factor...   300    4e-81


> AT2G32788.1 | Symbols:  | Encodes a Rapid ALkalinization Factor 
(RALF) family protein | chr2:13904916-13905110 FORWARD LENGTH=195
Length=195

 Score =  300 bits (162),  Expect = 4e-81
 Identities = 184/195 (94%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTATGTCTAAGAAATTAATAAAAGCTATTATTATATATATGGCTCTTATTATGGTG  60
            |||||||| |||||||||| || ||| ||||| || ||||||||||||||||||||||||
Sbjct  1    ATGGGTATCTCTAAGAAATCAACAAAGGCTATAATAATATATATGGCTCTTATTATGGTG  60

Query  61   TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGCTCTC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  61   TTCTTCACATTTGCAACACTCAAGACCAATGCGGAAGATGTGATAAGCTACGAAGTTCTC  120

Query  121  AAACAAGATCATGCATGGGGATGTAGTCCAAAGTATCCTAGATTATCTTGTCTCAAACAA  180
              |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct  121  TTACAAGATCATGCATGGGGATGTAGTCCAAAGTTTCCTAGATTATCATGTCTCAAACAA  180

Query  181  AAGGCCAATCCCTAG  195
            |||||||||||||||
Sbjct  181  AAGGCCAATCCCTAG  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5