BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482225
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32840.1 | Symbols: | proline-rich family protein | chr2:13... 1483 0.0
> AT2G32840.1 | Symbols: | proline-rich family protein | chr2:13932904-13934949
REVERSE LENGTH=1324
Length=1324
Score = 1483 bits (803), Expect = 0.0
Identities = 1027/1130 (91%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 9 TCCCGATCCCAATCCCAATCCCAATCCATCCGTCTCTGTAGCGGTATCGAGTCCAATCGT 68
|||| |||||||||| ||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct 128 TCCCAATCCCAATCCAAATCCAAATCCTTCCGTCTCTGTAGCAGTATCGACTCCAATCGT 187
Query 69 CACCGCATCCGAATCTCCGGTGACTCAACCTAACACAGTCAAAACGCCGTCTTCTCAGCC 128
||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||| ||
Sbjct 188 CACCGCATCTGAATCTCCGGTGACACAACCTAACACAGTCATAACGCCGTCGTCTCAACC 247
Query 129 TCAACCTCCACCACCAGCTCCTTCGTACAGAGCTATAGCTCCGCTTCATCGTCATCCTCA 188
|||||||| | |||||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 248 TCAACCTCAAACACCAGCTTCGTCGTACAGAGCCATAGCTCCGCTTCATCGTCA---TCA 304
Query 189 TCCTCATCAAAATGTCTACTCTCATCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAA 248
||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 305 TCCTCATCAAAATATCTACACTAACCCTTTACCGATTAGGCGTTCGAATTCCGTTACTAA 364
Query 249 TTCGCCTCATCAG---CCTCACCCAGACCCGTCTACTTTGATTTACCCGTTTGGTTCTTC 305
||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 365 TTCGCCTCATCAGCCTCCTCACCCAGACCCGTCTAGTCTGATATACCCGTTTGGTTCTTC 424
Query 306 GGGTCGAGGGTTTCCGACCCGACCCGGTAGACAGAATTCCAATTCCGTCGCTGATCCAGT 365
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 425 GGGTCGAGGGTTTCCGACCCGACCCGTTAGACAGAATTCCAATTCCGTCGCTGATCCAGT 484
Query 366 TGGTAGTCC---T---GGTGGGTATCCTCCTC---GGCCGGTTTATGCATACCACCAACA 416
||||||||| | ||||||||| |||||| |||| ||||| | |||||| | ||
Sbjct 485 TGGTAGTCCTAGTCCAGGTGGGTATACTCCTCGAGGGCCAGTTTACGGATACCA-C--CA 541
Query 417 TGGCCAATTTGGGTCGAATTTGGATCCAGTGCTTCAGCAGTTGATGAGAGCTGCACATCC 476
||||||||| | |||||||||||||||| || | ||||| |||||||||||||||||
Sbjct 542 TGGCCAATTCGTGTCGAATTTGGATCCAATG---AATCAGTTCATGAGAGCTGCACATCC 598
Query 477 TCAGAATCAACAATCTCCTCAACTTGGGTCGGGTCATATGAAAGGAGTTCCTCATTTTTT 536
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 599 TCAGAATCAACAATCTCCTCAACTTGGTTCCGGTCATATGAAAGGAGTTCCTCATTTTTT 658
Query 537 GCAACCTCGGGTTACTCCTTCTCCAACTTCAATTCTAGACAATAGTGGGCATAAGAAGGC 596
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 GCAACCTCGGGCTACTCCTTCTCCAACTTCAATTCTAGACAACAGTGGGCATAAGAAGGC 718
Query 597 CAGGAGCCGGGATGATGCTCTGGTCCTTGTTAGAAAAAGAAAGGTTAGAATAACCGAAGG 656
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 719 CAGGAGCCGGGATGATGCTCTGGTCCTCGTTAGAAAAAGAAAGGTTAGAATAACCGAGGG 778
Query 657 AGCTTCTCTATACTCACTGTGTAGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAA 716
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTTCTTTATACTCGCTGTGTCGATCTTGGTTGAGAAATGGTGCTCATGAGGGAATTAA 838
Query 717 GCCGCAGCGAAGTGATACAATGACATGTTTGCCAAAGCCTTTACCTGTGGACTTGACGGA 776
||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GCCGCAGCGAATTGATATGATGACATGTTTGCCAAAGCCTTTACCTGTGGACAAGACGGA 898
Query 777 GACAAGTTTGCCAAAAGAGTTAGTTGAAGAACCAAATCGCGAAGAAGACAAAGAGGACGA 836
|||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||
Sbjct 899 GACAAGTTTGCCAAAAGATTTAGTTGAAGAAGCAATTTGCGAAGAAGACAAAGAGGACGA 958
Query 837 GGAATCTGTGAAACATTTGTCAGAATCTGATCTGTTGAAAAGACATATAGACCGAGCTAA 896
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GGAATCTGTGAAACATTTGTCAGAATCTGATCTTTTGAAAAGACATATAGACCGAGCTAA 1018
Query 897 GAAGGTCCGCGCTCGATTGAGAGAAGAGCGGTTAAAGAGAATTGCGAGGTACAAGGCAAG 956
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1019 GAAGGTCCGCGCTCGATTGAGAGAAGAACGGTTAAAGAGAATCGCGAGGTACAAGGCAAG 1078
Query 957 ACTGGCTCTTCTTCTGCCACCATTTGGAGAGCAATGCCGGAACGAGTAAGGATAT-A--- 1012
| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| | |
Sbjct 1079 ATTGGCTCTTCTTCTGCCACCCTTTGGAGAGCAATGCAGGAACGAGTAATGATTTTAAAG 1138
Query 1013 TTAGGGACTTC--TGTGAATATTCTTGCAGTTGATTTAGAAATCATACAAAGTACCTTAG 1070
||||||||||| ||||||||| |||||||||||||||||||| | | ||| || |||||
Sbjct 1139 TTAGGGACTTCGGTGTGAATATACTTGCAGTTGATTTAGAAATGACATAAATTATCTTAG 1198
Query 1071 AGCCAGAGTTATGT-----GT--GTGT--AATATAAGAAAGGTTTTCTCT 1111
|||||||||||||| || |||| |||||||||||| ||||||||
Sbjct 1199 AGCCAGAGTTATGTCTTATGTCTGTGTGTAATATAAGAAAGATTTTCTCT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5