BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482227
Length=2426
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32850.2 | Symbols: | Protein kinase superfamily protein | ... 3517 0.0
> AT2G32850.2 | Symbols: | Protein kinase superfamily protein
| chr2:13935186-13938845 REVERSE LENGTH=2525
Length=2525
Score = 3517 bits (1904), Expect = 0.0
Identities = 2177/2304 (94%), Gaps = 38/2304 (2%)
Strand=Plus/Plus
Query 158 ATTTGATTGGCTCTTCTCAGCATCTGGGTTTTTGCAAAGCATTCTTATTACTTCCACTGA 217
||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ATTGGATTGGCACTCCTCAGCATCTGGGTTTTTGCAAAGCATTCTTATTACTTCCACTGA 243
Query 218 TTCAAACATGTGGAAGTTTAAACCGTTTGCTCAAAAAGAACCTGCGGGTCTCGAAGGTCG 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 244 TTCAAACATGTGGAAGTTTAAACCTTTTGCTCAAAAAGAACCTGCGGGTCTCGAAGGTCG 303
Query 278 ATTTCTCGAAATAGGAAATCTGAAAGTTCAGGTTAGAAACGTCATTGCGGAAGGAGGTTT 337
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 304 ATTTCTCGAGATAGGAAATCTGAAAGTTCAAGTTAGAAATGTCATTGCGGAAGGAGGTTT 363
Query 338 CTCCAGTGTTTACTTAGCCCAAGATGTAAATCACGCGTCAAAGCAATATGCTTTGAAGCA 397
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCCAGTGTTTACTTAGCTCAAGATGTAAATCACGCGTCAAAGCAATATGCTTTGAAGCA 423
Query 398 CATCATATGCAATGACGAGGAGTCGCTTGAACTCGTAATGAAAGAGATCTCGGTTCTGAA 457
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 CATGATATGCAATGACGAGGAGTCACTTGAACTCGTAATGAAAGAGATCTCGGTTCTGAA 483
Query 458 ATCTCTCAAGGGACATCCAAATGTTGTGACGCTCTACGCACATGGTATCTTGGATATGGG 517
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 ATCCCTCAAGGGACATCCAAATGTTGTCACGCTCTACGCACATGGTATCTTGGATATGGG 543
Query 518 GAGGAATAAAAAAGAAGCTCTTTTGGCTATGGATTTTTGCGGCAAATCTCTTGTGGATGT 577
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 544 GAGGAATAAAAAAGAAGCTCTTTTGGCTATGGATTTTTGTGGTAAATCTCTTGTGGATGT 603
Query 578 GCTTGAGAATAGAGGTGCTGGTTACTTTGAAGAGAAACAAGCTCTTACAATTTTCAGAGA 637
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 604 GCTTGAGAATAGAGGTGCTGGTTACTTTGAAGAGAAACAAGCTCTTACGATTTTTAGAGA 663
Query 638 TGTGTGTAATGCTGTCTTTGCAATGCATTGTCAAACCCCACGCATTGCTCACAGAGACTT 697
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 664 TGTGTGTAATGCTGTCTTTGCAATGCATTGTCAATCCCCACGCATTGCTCACAGAGACTT 723
Query 698 GAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAGTTGTGCGATTTTGGAAG 757
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 724 GAAGGCTGAGAATCTTCTATTGAGCTCAGATGGACAATGGAAATTGTGTGATTTTGGAAG 783
Query 758 CGTTTCTACAAATCACAAGATTTTCGAAAGAGCAGAAGAGATGGGCATTGAAGAAGATAA 817
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 784 CGTTTCGACAAATCACAAGATTTTTGAAAGAGCAGAAGAGATGGGAATTGAAGAAGATAA 843
Query 818 TATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGATGTGGGATCTCTTTCGAAG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TATTAGAAAATACACAACACCAACATATAGAGCTCCTGAGATGTGGGATCTCTTTCGAAG 903
Query 878 GGAGATGATAAGCGAGAAGGTCGATATATGGGCTCTTGGATGTCTCTTGTTTCGGATATG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GGAGATGATAAGCGAGAAGGTCGATATATGGGCTCTTGGATGTCTCTTGTTTCGGATATG 963
Query 938 CTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAGATCTTAAACGGGAATTATCG 997
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 964 CTATTTCAAGAATGCATTTGATGGAGAATCAAAGCTGCAAATCTTAAACGGGAATTATCG 1023
Query 998 TATTCCAGAATCGCCTAAATACAGTGCATTTGTTACAGATCTCATCAAAGAAATGCTTCA 1057
|||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||
Sbjct 1024 TATTCCAGAATCGCCTAAATACAGTGTATTTATTACGGATCTCATCAAAGAAATGCTCCA 1083
Query 1058 AGCTTCACCCGACGAACGACCAGATATTACACAGATTTGGTTTCGTGTCAATGAGCAGCT 1117
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 AGCTTCACCCGATGAACGACCAGATATTACACAGATTTGGTTTCGTGTCAATGAGCAGCT 1143
Query 1118 TCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTGCTGGAGT 1177
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1144 TCCTGCTAATTTACAGAAATCATTACCGGATCGACCACCTGAAATGCAATCTACTGGAGT 1203
Query 1178 CCATGATGGCTCATCAAAATCAGCAAATAAATCTTCTCCAGCACCTCGTAGAAGTCCGCC 1237
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1204 CCATGATGGCTCATCAAAATCAGCAACTAAACCTTCTCCAGCACCTCGTAGAAGTCCGCC 1263
Query 1238 ACCGCCGCCACCATCTTCTGGAGAATCAGATAGTGGAGGACCACTAGGTGCCTTTTGGGC 1297
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1264 ACCGCCGCCACCATCTTCTGGAGAATCAGATAGTGGAGGACCGCTCGGTGCCTTTTGGGC 1323
Query 1298 GACTCAGCACGCCAAAACCTCGGTAT-TGTCAGAAGACAACAAAAGCATGCCTAAATTTG 1356
||||||||| || |||||||| || | | |||||||| ||||||| ||||||||||||||
Sbjct 1324 GACTCAGCATGCTAAAACCTCAGT-TGTATCAGAAGATAACAAAAACATGCCTAAATTTG 1382
Query 1357 ATGAACCAAACAGTAACACAACTAAATCTGAAAGAGTTCGTGTGGATAGTCAACATCCCA 1416
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 1383 ATGAACCAAACAGTAACACATCTAAATCTGAAAGAGTTCGTGTGGATAGTCATCAACCCA 1442
Query 1417 AGAAGCCTAGTCCTGTGAGAGGAGAGGTTCGTGGTAT-----GAA-T-----TCT----- 1460
| || || ||||||||||||||||||| ||||||||| ||| | |||
Sbjct 1443 AAAAACCAAGTCCTGTGAGAGGAGAGGCTCGTGGTATTCAAAGAAATAAAGATCTTGAAA 1502
Query 1461 C-A-GA------AG--GA-TACAACTCCTGCTGCAACCAATAACAGGACAAGAGTGTCCA 1509
| | || || || |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1503 CTACGATTTCTCAGAAGAATACAACTCCTGCTGCAGCCAATAACATGACAAGAGTGTCCA 1562
Query 1510 AGGATGACGCCTTTAACTCGTTTGTTGCTGACTTTGATACCACGAAGCTCGATAATGGTA 1569
||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1563 AGGATGATGCCTTCAACTCGTTTGTTGCTGACTTTGATACCACAAAGTTCGATAATGGTA 1622
Query 1570 ATAAACCTGGAAAAGAAGAGGCGTTGGAAGCTGAGATAGAGAGGTTAAAAGACGAGTTGA 1629
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1623 ATAAACCTGGCAAAGAAGAGGCATTGGAAGCTGAGATACAGAGGTTAAAAGACGAGTTGA 1682
Query 1630 AGAAAACAAATTCAGAGAAGGCTGAAATAACTGCTAAGTTTGAAAAGCTTTCTGCTATCT 1689
|| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1683 AGCAAACAAAATCAGAGAAGGCAGAAATAACTGCTAAGTTTGAAAAGCTTTCTGCTATCT 1742
Query 1690 GCAGATCACAGCGGCAAGAGTTGCAGGATCTCAAACAAACACTTGCTTCTAAAAGTGCCT 1749
||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1743 GCAGATCGCAAAGGCAAGAGTTGCAGGATCTCAAACAAACACTTGCCTCTAAAAGTGCCT 1802
Query 1750 CACCATCACCGAGCAGAGAATCTTCACAAAGTCAACCCTCTCCAGGGATGCATTCCATGT 1809
|||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1803 CACCGTCACCGAGCAGAGACTCTTCACAAAATCAACCCTCTCCAGGGATGCATTCCATGT 1862
Query 1810 CATCAACTCCATCGAGAGATAAGATTGAAGGAACAATGTGGGAACTTCAACAGGACAGAT 1869
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1863 CATCAACTCCATCGAGAGATAAGATGGAAGGAACAATGTGGGAACTTCAACAGGACAGAT 1922
Query 1870 CTAATTGGTCCACTGGCAGCTCGGATACAAATTCATGGCAACCTTTTAGTGATGAAGCGA 1929
|||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1923 CTAACTGGTCAACTGGCAGCTCTGATACAAATTCATGGCAACCTTTTAGTGATGAAGCGA 1982
Query 1930 AACCCGTGATGGAGTCTGCATCAAAGGGTAACAATAATACGATTAATCAGTCTGTGAGAA 1989
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1983 AACCCGTGATGGAATCTGCATCAAAGGGTAACAATAATACGATTAATCAGTCTGTGAGAA 2042
Query 1990 CCAGAAGTAAACCAGCTTCTGCTGCAGGTACTCAAGGTTTTGAGGCATGGGGTTTTGAGA 2049
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2043 CCAGAAGTAAACCAGCTTCTGCTGCAGGTACTCAAGGTTTTGAGCCATGGGGTTTCGAGA 2102
Query 2050 CAGAATCCTTCAGAGCCGCTGCCACGTCTTCAGCTACTACTGCT---TCTGCAACACAAA 2106
|||||||||| ||||||||||| |||||| ||||| ||||| || |||| ||||||||
Sbjct 2103 CAGAATCCTTTAGAGCCGCTGCAACGTCTGCAGCTGCTACTTCTGCATCTGGAACACAAA 2162
Query 2107 GATCTATGGGCTCTGGAAACAACACTTCACAGAGATATGGGAACTCAAAGATGAGAGATA 2166
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2163 GATCTATGGGCTCTGGAAACAGCACTTCACAGAGATATGGGAACTCAAAGATGAGAGAAA 2222
Query 2167 ACCAGAAAACAGCTCAACCTGCTGGATGGGCTGGCTTCTAAAACTCACTCAGATGCTCAT 2226
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 2223 ACCAGAAAACAGCTCAACCTGCTGGATGGGCCGGCTTCTAAAACTCACTCAGATGCGCAT 2282
Query 2227 TACTATATCTTCCTCTTGCAACAACAACAGCTTCATGTTGCTGCCATTACAGAATCTTGA 2286
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2283 TGCTATTTCTTCCTCATGCAACAACAACAGCTTCATGTTGCTGCCATTACAGAATCTTGA 2342
Query 2287 ATCCTTTTTTGTAGATGATGATCATCCCCTGTTTTTGTGCTGCT---AAATATACCCCAC 2343
||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2343 ATC-TTTTT-GTAGATGATGATCATCCCCTGTTTTTGTGCTGCTGCTAAATATACCCCAC 2400
Query 2344 CCATATCCAGTAT-TTTTATGTAGAGTCTTGAACTTTACACATTCTCTGAGCTGTGGCCA 2402
||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2401 CCATATCCATTATGTTTTATGTAGAGTCTTAAACTTTACACATTCTCTGAGCTGTGGCCA 2460
Query 2403 AATATCTCAGCTTTTGGATTATTA 2426
|||||||||||| ||||||||||
Sbjct 2461 GATATCTCAGCTTATGGATTATTA 2484
Score = 213 bits (115), Expect = 7e-54
Identities = 147/161 (91%), Gaps = 7/161 (4%)
Strand=Plus/Plus
Query 1 AACCAAAATGTTCTTATCTCACTTTCCTTTCTATTCCCGGATTTGCCGctttcttcttct 60
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 3 AACCAAAATGTTCTTATCTCACTTTCCTTTCTATTCCCGGATTTGCCG----C-T-TTCT 56
Query 61 tcttcttcaacatctctctctcGAAAT-TGCCCTTTTAAAGTTGTCTCCTTTCTACGCAA 119
||||||||| |||||||||||| |||| ||||||||||||||| |||||| |||||||
Sbjct 57 TCTTCTTCATCATCTCTCTCTCAAAATCACCCCTTTTAAAGTTGTTTCCTTTATACGCAA 116
Query 120 AAGTGAACGCAGATCTTAATGCAGCTACTCTGATTTCGATT 160
||||||||||||||||||||||||||||| |||||||||||
Sbjct 117 AAGTGAACGCAGATCTTAATGCAGCTACTGTGATTTCGATT 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120481308000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5