BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482233
Length=2253
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32910.1 | Symbols: | DCD (Development and Cell Death) doma... 3042 0.0
> AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:13959036-13962118 FORWARD LENGTH=2406
Length=2406
Score = 3042 bits (1647), Expect = 0.0
Identities = 2021/2195 (92%), Gaps = 52/2195 (2%)
Strand=Plus/Plus
Query 92 TCCTTGAAAATGGAGCTGCAAGATGTTAAGAATGATGAGAATGAGAAAGCTCCTGAGGCT 151
|||||||||||||| || ||||||| || ||||||||||||||||||||| |||||||||
Sbjct 193 TCCTTGAAAATGGAACTACAAGATGCTATGAATGATGAGAATGAGAAAGCCCCTGAGGCT 252
Query 152 TCGGTGGTTGC-GAATGATGAAGTTGCCGGGAATAATGGGGAAGTGGTGGTTCAAGCTGA 210
||||||||| | ||||||||||||| ||||||| |||||||| || |||||| |||||||
Sbjct 253 TCGGTGGTT-CAGAATGATGAAGTTTCCGGGAACAATGGGGATGTAGTGGTTGAAGCTGA 311
Query 211 GGAAAAGGATGTGAATGAGGTTGTACAAACCGTTGATGGA-GAAAAATGTAAGGCAGATG 269
||||||||||| ||||||||||||| || |||||||| | |||||| ||||||||||||
Sbjct 312 GGAAAAGGATGGGAATGAGGTTGTAGAACCCGTTGATTCAGGAAAAA-GTAAGGCAGATG 370
Query 270 ACGAGTTTGTTGAGACTTTAG-TGGATACCAATCAGGATTTGGC-AGCCTT-AAAAGCAC 326
||||||||||||| | | | | |||||||||||||||||||||| | |||| |||| ||
Sbjct 371 ACGAGTTTGTTGAAAGTCT-GTTGGATACCAATCAGGATTTGGCTA-CCTTCAAAA-TAC 427
Query 327 CGCTGGCGGAAAATGATGCAGAAAATGTTACTGTTGAAGAACCCTCTCTTCTTGCTTCTG 386
|| | | |||||||||| | |||||||| |||||||||||||| ||||||| ||| ||||
Sbjct 428 CGGTAGAGGAAAATGATACGGAAAATGTGACTGTTGAAGAACCTTCTCTTCCTGCCTCTG 487
Query 387 TTGAAGCAACTTCTTCTGGAATGACAAAGCCACAGGGTTTACCAGCGAAAACTAAAATTG 446
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 488 TTGAAGCAACTTCTTCTGGAATGAAAAAGCCTCAGGGTTTACCAGCGAAAACTAAAATTG 547
Query 447 TTAAAAAAGTAAAGAAGCTAGTAAAGAGGAAAATTA-AGAGAGGCACTGCT--TC---T- 499
|||| |||||||||||||| ||||| |||||||||| | | |||||||||| || |
Sbjct 548 TTAAGAAAGTAAAGAAGCTGGTAAAAAGGAAAATTATA-AAAGGCACTGCTGCTCAGGTG 606
Query 500 -C-----A-G-G--TGGC-T-------GGTGAACAAAGTGCAGAGCCTTCTCTTGGCGAA 541
| | | | || | | ||||||||||||| |||||||||||||||||||
Sbjct 607 GCTGGTGAGGAGAATGTCATCAAGGAAGGTGAACAAAGTGGAGAGCCTTCTCTTGGCGAA 666
Query 542 AGCGAAAAGGACAAAGATTCAGTACCCTATCTTGGAGGAAATGATATGGAATTTCAGAAA 601
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 667 AGCGAAAAGGACAAAGATTCAGAACCCTATCTTGGAGGAAACGATATGGAATTTCAGAAA 726
Query 602 GAATTAGAAGAACTAGCAGTAGCTCCTCAACCTGCAGATGATGTTAAAGTTGTTGGAGGC 661
||| | ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 727 GAA-T--------TAGCAGTAGCTACTCAACCTGCAGTTGATGTTAAAGTTGTTGGAGGG 777
Query 662 GAACCTTCTGGTAAGGAAACACTAAAAGAGGTAAAGGGAAGAGCTAAGAGGCAAAGGGGG 721
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 778 GAGCCTTCTGGTAAGGAAACACTAAAAGAGGTAAAGGGAAAAGCTAAGAGACAAAGGGAA 837
Query 722 AAAAAATTCAAAGGGACTCTTGCTCAGGGGACGGATAAAGAGAATGCAACTGATAAGAGA 781
|||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 838 AAAAAATTCAAAGGTACTCTTGCTCAGGGGATGGATAAAGAGAGTGCAATTGATAAGAGA 897
Query 782 GATGTCGGAGCTTCTCCAGGAGGAAACTTGATCGAAGCTAAGAAAGCTATTGATGGTTCT 841
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 898 GACGTCGGAGCTTCTCCAGGAGGAAACTTGATCGTAGCTAAGAAAGCTATTGACGGTTCT 957
Query 842 GTAGAAGCCAAAACTGGCTTGGCTGAAGACAAGAGACGCAAAAGGAAGAGA-CAGAGAAA 900
||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 958 GTAGAAGCCAAAACTGGCTTGACTGAAGACAAGAGACGCAAAAGGAAGAGACCA-ACAAA 1016
Query 901 ACAGGTTATAGATTCAAACAAGAAACCTAGGGAAGATGTAGTAGCTGCTGCTGATGCAAC 960
|||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||| ||||
Sbjct 1017 ACAGGTTAGAGATTCAAACAAGAAACTTAGGCAAGATGTAGTAGCTGGTGCTGATACAAC 1076
Query 961 AGAACAAAGAATGGAAGAGAGGAAAGAGCAG-CGTGTTGACCCTGGGAAAAGAGAAATTG 1019
|||||| ||||||||||||||||||||||| || |||||||||| |||||||||||| |
Sbjct 1077 AGAACAGGGAATGGAAGAGAGGAAAGAGCAGCCG-GTTGACCCTGAGAAAAGAGAAATGG 1135
Query 1020 ATGGGCATGGGAAAGTAAAGATTGGTGGATTGATCTTCATGTGCAATACAAAAACTAGAC 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ATGGGCCTGGGAAAGTAAAGATTGGTGGATTGATCTTCATGTGCAATACAAAAACTAGAC 1195
Query 1080 CCGATTGTTTTCGGTTCAGTGTGATGGGTGTACAAGAGAAAAGGAAGGATTTTGTCATGA 1139
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1196 CCGATTGTTTTCGGTTCAGTGTAATGGGTGTACAAGAGAAAAGGAAGGATTTTGTCAAGG 1255
Query 1140 GTATCAAGCCTGGGCTTAAGCTTTTTCTTTATGACTATGATCTCAAACTCCTCTATGGAA 1199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1256 GTATCAAGCCTGGGCTTAAGCTTTTTCTTTATGATTATGATCTCAAACTCCTCTATGGAA 1315
Query 1200 TATTTGAAGCATCCTCTGAGGGTGGGATGAAACTCGAGCGCAATGCTTTTGGTGGATCCT 1259
| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1316 TTTTTGAAGCATCCTCTGCTGGTGGTATGAAACTTGAGCGCAATGCTTTTGGTGGATCCT 1375
Query 1260 TTCCTGCTCAGGTGCGCTTTAAGATTTTTAGTGATTGCATCCCATTGGCTGAGAGCCAAT 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1376 TTCCTGCTCAGGTGCGCTTTAAGGTTTTTAGTGATTGCATCCCATTGGCTGAGAGCCAAT 1435
Query 1320 TTAAGAAAGCAATCA-AGGAGAACTACAATAATAAAAACAAGTTCAAAACAGAATTGACT 1378
| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCAAGAAAGCAATCATA-GAGAACTACAATAATAAAAACAAGTTCAAAACAGAATTGACT 1494
Query 1379 CATAAGCAGGTAATTAAGCTTAAAAAGCTTTTTCGGCCAGCTGCGATCCCTGCACAAGTT 1438
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CATAAGCAGGTATTTAAGCTTAAAAAGCTTTTTCGGCCAGCTGCGATCCCTGCACAAGTT 1554
Query 1439 TCCCACACCCAGCAAATCCCTGTGCCTCGTGGTGCTGACAGCAAAAGATCTGATAGAGAC 1498
|||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||
Sbjct 1555 ACCCACACCCAGCAAATCCCTGTTCCTCGTGATACTGACAGGAAAAGATCTGATAGAGAC 1614
Query 1499 CGGTATGCCCCTGGTAGCAGTAGGGGTCACCTGACCCGCACACATGAAAGAAGACGTGCT 1558
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 1615 CGGTATGCCCCTGGTAGCAGTAGGGGTCACCCAACACGCAAACATGAAAGAAGACGTGCT 1674
Query 1559 TCACCTCCTCCACGCAGAGAAGAACAACCGCGTGATTTTTATCTTAGTGAAAGAGAGTAT 1618
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1675 TCACCTCCTCCACGCAGAGAAGAACAACCGCGTGATTTATATCTTAGTGAAAGGGAGTAT 1734
Query 1619 CGAACATATGGCTTGAGAGGAGGGGAAACAACCCAGCATTACCAAATTGCACCTCCAGAA 1678
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1735 CGAACATATGGCTTGAGAGGAGGAGAAACAACCCAGCATTACCAAATTCCACCTCCAGAA 1794
Query 1679 TCTTCTTCTTCTTACCACATTGTCAACCGAGACCGTGTTTGTTTGGATTCTTACCGTTCA 1738
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1795 TCCTCTTCTTCTTACCACATTGTCAACCGAGACCGTGTTCATTTGGATTCTTACCGTTCA 1854
Query 1739 TCTATGGACCATGACCGGCTTTTGAGACAAGCAGAGATTGAGAGGCATGACCGTAGGGAA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TCTATGGACCATGACCGGCTTTTGAGACAAGCAGAGATTGAGAGGCATGACCGTAGGGAA 1914
Query 1799 GTTCGTCATCCTCATTTGTCTGAAAGAGACTACCACACGTATGATCATCTTAGTTCTAGA 1858
|||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct 1915 GTTCGTCACCCTCATTTGTCTGAGAGAGACTACCAGACGTATGATCATCTTACTTCTAGA 1974
Query 1859 CGGGAAATCTTGGGTCGAAACTCACCCGACCCACCAGCTTCAGCAGTTGCTCTGGACTCC 1918
||||||||||||| ||||||||| || |||||||||| |||||| ||| ||||||| |||
Sbjct 1975 CGGGAAATCTTGGTTCGAAACTCGCCTGACCCACCAGATTCAGCGGTTACTCTGGATTCC 2034
Query 1919 TACAGGAGATATCCGTATTACATTTATGAGCACCATGCTCTTGAAAGACCACCAAGGACA 1978
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2035 TACAGGAGAGATCCGTATTACATTTGTGAGCGCCATGCTCTTGAAAGACCACCAAGGACA 2094
Query 1979 TACATGGCTGCTCCAGGAAGAGAAGATGATGACCTGTATTCCCGGTATGTTACACCGGAT 2038
||||||| | ||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct 2095 TACATGGTTTCTCCAGGTAGACAAGATGATGACCTGTATTCCCGGTATGTAACACCGGAT 2154
Query 2039 TCATTGGCTGAGTACTACCGATCATCACAAAGATACCCAAGCGTAACTGAACCTGAGCTT 2098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 TCATTGGCTGAGTACTACCGATCATCACAAAGATACCCAAGCGTAACTGAACCTGAGCTT 2214
Query 2099 CCGCCTTCGTTAGTAACATCCCGGTATGCGTATTCACGGTCTTTGCCTTATTCTCACCGC 2158
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2215 CCGCCTTCGTTAGTAACATCCCGGTATGCTTATTCTCGGTCTTTGCCTTATTCTCACCGC 2274
Query 2159 TGAAATCAGATTGTGTAATTCTCCTCTCCCTTTGAATTTATCTGATGTTTCATGTGATGT 2218
|||||||||| |||||||||||||| | |||||||||||||||||||||| |||| || |
Sbjct 2275 TGAAATCAGAATGTGTAATTCTCCTATTCCTTTGAATTTATCTGATGTTTAATGT-ATCT 2333
Query 2219 TGGATATGGATACTAAAGATTTGCAGCAAAAGGGT 2253
||||||||||||||||||| |||| || |||||||
Sbjct 2334 TGGATATGGATACTAAAGAGTTGCTGCCAAAGGGT 2368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111796613715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5