BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482241
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32990.1 | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 ... 2771 0.0
> AT2G32990.1 | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8
| chr2:14003250-14006017 FORWARD LENGTH=1862
Length=1862
Score = 2771 bits (1500), Expect = 0.0
Identities = 1738/1851 (94%), Gaps = 23/1851 (1%)
Strand=Plus/Plus
Query 1 AGAGACTAGTGAGTGAGAGAGTCCATCG----CTTTC--T-T-TCTCT--CTCTCTATTC 50
|||||||||||||||||||||||||||| ||||| | | ||||| |||||| |||
Sbjct 7 AGAGACTAGTGAGTGAGAGAGTCCATCGCTTTCTTTCTTTCTCTCTCTCGCTCTCTCTTC 66
Query 51 ATCTCCAACAGAGACTTCTTTCTAAAGAAAGAGATCTTCA-AAAAATGACTGTGATGGAT 109
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||
Sbjct 67 ATCTCCAACAGAGACTTCTTTCTAGAGAAAGAGATCTTCACAAATATGACTGTGATGAAT 126
Query 110 CACCGACACAAGCCATGCCATTTTCTCCTCCTCCTTCTCCTTCTGATCACTGTCTTCTCC 169
||||||||||||| ||| || ||| | ||||| | |||||||||||||||||||||||
Sbjct 127 CACCGACACAAGCAATGTCA-TTT-T-CTCCT-C--CTCCTTCTGATCACTGTCTTCTCT 180
Query 170 GCCGTGTTGGCCGATGTTTCGTCGGAGACAGACGTCGGAAGGTTTGACTACGGTGAAGCA 229
|||| ||||| | |||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct 181 GCCGCGTTGGATGGTGTTTCTTCCGAGACAGACGTCGGAGGGTTTGACTACGGTGAAGCA 240
Query 230 TTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGGAGACTTCCGTATAACCAG 289
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 TTGTCTAAAAGCTTACTCTACTTTGAAGCTCAGAGATCAGGAAGACTTCCGTACAACCAG 300
Query 290 CGCGTGACGTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAACAAGGGGTGGATTTA 349
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CGCGTGACTTGGCGTGATCACTCTGGTCTCACCGATGGTCTTGAACAAGGGGTTGATTTA 360
Query 350 GTGGGAGGATATCACGACGCCGGTGATCATGTTAAATTTGGACTGCCCATGGCTTTCACG 409
||||||||||||||||||||||| || ||||||||||||||||| || |||||||| |||
Sbjct 361 GTGGGAGGATATCACGACGCCGGAGACCATGTTAAATTTGGACTTCCGATGGCTTTTACG 420
Query 410 GTGACGATGTTATCATGGAGTGTAATAGAGTACGGTGACACACTCGCTTCCACCGGCGAG 469
||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 421 GTGACAATGTTGTCATGGAGTGTAATAGAGTACGGTGACTCACTCGCTTCCACCGGAGAG 480
Query 470 TTATCTCACGCGCTTGAAGCCATTAAGTGGGGAACAGACTACTTCATCAAGGCACATACA 529
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 481 TTATCTCACGCGCTTGAAGCCATCAAGTGGGGAACAGACTACTTCATCAAGGCACACACA 540
Query 530 AGCCCAAATGTTTTATGGGCTGAAGTAGGCGACGGTGACACTGACCACTACTGTTGGCAA 589
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 541 AGCCCAAATGTCTTATGGGCCGAAGTTGGCGACGGTGACACTGACCACTACTGTTGGCAA 600
Query 590 AGACCGGAGGACATGACGACTTCACGGCGAGCTTTCAAGATCGACGAAAACAATCCTGGT 649
||||||||||||||||||||||||||| |||||||||||||||| || || ||||| ||
Sbjct 601 AGACCGGAGGACATGACGACTTCACGGAGAGCTTTCAAGATCGATGAGAATAATCCGGGA 660
Query 650 TCAGATATCGCCGGGGAAACCGCCGCGGCTATGGCGGCAGCTTCGATCGTTTTCCGTTCA 709
||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAGATATCGCTGGAGAAACTGCGGCGGCTATGGCGGCAGCTTCGATCGTTTTCCGTTCA 720
Query 710 ACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAATTGTTTGGGTTTGGA 769
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 ACAAATCCACATTACTCTCACCTTCTCTTGCACCATGCCCAACAATTGTTTGAGTTTGGA 780
Query 770 GACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAAAGTTATTATGCCTCG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACAAGTACAGAGGAAAATACGATGAGAGTCTAAAAGTTGTGAAAAGTTATTATGCCTCG 840
Query 830 GTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACGTGGCTTTATCGAGCCACCGAC 889
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 GTGAGTGGGTACATGGACGAGCTTTTATGGGGTGCCACTTGGCTTTATCGAGCCACCGAC 900
Query 890 AATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTAGGTGGCCTTTCTTGG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATGAGCACTATATGAGTTATGTGGTTGACATGGCTCACCAACTAGGTGGCCTTTCTTGG 960
Query 950 GCCATGTCCGAGTTTAGCTGGGACGTCAAGTACGCCGGCGTTCAGCTCCTCGCTTCCATG 1009
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||
Sbjct 961 GCCATGTCCGAGTTTAGCTGGGACGTCAAGTTCGCCGGTGTTCAACTCCTAGCTTCCATG 1020
Query 1010 TTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAACAATACAAATCAAAG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTGCTAAAAGAAGAAAAGCACAAGCAACATTCTAAAGTCCTACAACAATACAAATCAAAG 1080
Query 1070 GCGGATCATTACCTATGCTCAATTCTCAACAAGAATATCAACGGCACAAACGTTCAGCGA 1129
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1081 GCGGATCATTACCTATGCTCAATTCTCAACAAGAACATCAACGGCACAAACGTCCAGCGA 1140
Query 1130 ACTCCGGCTGGTTTACTCTACGTCCGGCAATGGAACAATATGCAATACGTATCCACCGCA 1189
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1141 ACTCCTGCCGGTTTACTCTACGTCCGACAATGGAACAATATGCAATACGTATCCACAGCA 1200
Query 1190 TCTTTCCTCCTAACCGTATATTCGGATCATCTCCGAAAATCAAACACCGATCTCGAGTGT 1249
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 TCTTTCCTCCTAACCGTATATTCTGATCATCTCCGAAAATCAAACACCGATCTCGAGTGT 1260
Query 1250 CACGAAGGAACCGTAACTCCTGATGAGATGCTTGGCTTTGCGAAATCCCAAATCGATTAC 1309
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1261 CACGAAGGAACCGTAACTCCTGACGAGATGCTTGGCTTTGCGAAATCTCAAATCGATTAC 1320
Query 1310 ATTTTAGGATCGAATCCGATGGAAACAAGCTATCTTGTCGGGTACGGTCCAAAATACCCG 1369
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1321 ATTTTAGGATCAAATCCAATGGAAACAAGTTATCTAGTCGGGTACGGTCCAAAATACCCG 1380
Query 1370 ACTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAACACAAAGGGTTTATT 1429
| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1381 ATTAGGGTTCATCATCGAGGCGCGTCTATCGCTTCTTTTAAAGAGCACAAAGGTTTTATA 1440
Query 1430 GGATGTACTCAAGGATATGATAATTGGTACGGACGGTCTGAGCCAAATCCGAGTGTTTTA 1489
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1441 GGATGTACTCAAGGATATGATAATTGGTATGGACGGTCCGAGCCAAATCCGAGTGTTTTA 1500
Query 1490 GTTGGGGCTTTGGTCGGAGGGCCGGATGACCAGGATGAATTTGATGACCGGAGGGATAAT 1549
|| ||||||||||| ||||| |||||| |||||||||| |||||||||||||||| ||||
Sbjct 1501 GTCGGGGCTTTGGTTGGAGGACCGGATCACCAGGATGATTTTGATGACCGGAGGGGTAAT 1560
Query 1550 TACGTTCAAACAGAGGCTTGTACGTACAATACTGCTCCTTTGGTCGGTGTGTTTGCGAGA 1609
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TACGTTCAAACGGAGGCTTGTACGTACAATACTGCTCCTTTGGTCGGTGTGTTTGCGAGA 1620
Query 1610 CTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGCTTGGTTGCAACTTAT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 CTTATAGAGCTTGAGGAGCAAAAACTTGAAGAAGAAGATGTGAGCTTGGTTGCAACTTAT 1680
Query 1670 AAGAGATAGTTTTTATTaaaaaaa-aTCAATACAAA-AATAGAAAATGTGGTTTTATTTT 1727
||||||||||||||||| || || | ||| | ||| || ||||||||||||||||||||
Sbjct 1681 AAGAGATAGTTTTTATTTAATCAATA-CAAAAAAAAGAA-AGAAAATGTGGTTTTATTTT 1738
Query 1728 GCACCCATTTTGCCATTTCTATATTGTTAGAGTTTTTCTTCTCAACAATTTTTCGTGTGT 1787
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1739 GCACCCATTTTGCCATTTCTATATTGTTAGAGTTTTTCTTCTCAACTTTTTTTTTT-TGT 1797
Query 1788 TTAAATaaaaaa-aaaaaGTGTGTATAAAATATTAATTATCAATATAGATT 1837
|| | ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1798 TTTGTTTTTAAATAAAAAGTGTGTATAAAATATCAATTATCAATATAGATT 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5