BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482248
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33120.2 | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin... 1098 0.0
AT1G04750.1 | Symbols: VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | ... 590 2e-167
AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated ... 553 2e-156
> AT2G33120.2 | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin-related
protein 1 | chr2:14043459-14045543 REVERSE LENGTH=1222
Length=1222
Score = 1098 bits (594), Expect = 0.0
Identities = 663/696 (95%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 207 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTTATCCTCGTTGAG 266
Query 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 267 TTCACAGATTTCAAAGGCAATTTCACATCAATCGCTGCTCAGTGCCTTCAGAAGCTTCCT 326
Query 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 327 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCACACGTTCAATTACCTCGTCGAA 386
Query 793 AATGGATTCAGTGAGTCAAAATATTGCTCGATCTATGCTCCCTATTGTGTTGTTGCAGTT 852
|||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 387 AATGGATTCAGTGAGTCAAAATATTGCTCG----AT-CT-CCTATTGTGTTGTTGCAGTT 440
Query 853 GATTCTGCTGGGAGACAGATTCCTATGGCTTTCTTGGAACGAGTGAAGGAGGATTTTAAC 912
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 441 GATTCTGCTGGGAGGCAGATTCCTATGGCTTTCTTGGAACGAGTTAAGGAGGATTTCAAC 500
Query 913 AAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCCAACAGCTTGAATAAAGAATTT 972
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 501 AAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCAAACAGCTTGAATAAAGAATTT 560
Query 973 GGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATCATCCTGATGAGATTAGCAAG 620
Query 1033 CTTGCTAAGGTGAAGGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAG 1092
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 CTTGCTAAGGTTAAAGCTCAAGTGTCTGAAGTTAAAGGTGTTATGATGGAAAACATTGAG 680
Query 1093 AAGGTTCTTGATCGTGGTGAGAAAATTGAGCTTCTGGTGGACAAAACCGAAAACCTTCGT 1152
||||||||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 681 AAGGTTCTTGACCGTGGTGAGAAGATTGAGCTTTTGGTTGACAAAACAGAAAACCTTCGC 740
Query 1153 TCACAGGCGCAAGATTTCAGAACACAAGGAACTCAAATGAGAAGGAAGATGTGGTTTCAG 1212
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 741 TCACAGGCGCAAGATTTTAGAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTCAG 800
Query 1213 AACATGAAGATAAAACTGATTGTTCTTGCAATCATCATTGCCTTGATTCTCATCATCATC 1272
|||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 801 AACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCATC 860
Query 1273 CTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAA 1308
||||| |||||||||||||||||||||||||||||
Sbjct 861 CTCTCAATTTGTGGGGGATTCAACTGCGGTAAATAA 896
Score = 431 bits (233), Expect = 1e-119
Identities = 256/267 (96%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 347 TCACAGGCGCAAGATTTCAGAACACAAGGAACTCAAATGAGAAGGAAGATGTGG-TTCAA 405
||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 741 TCACAGGCGCAAGATTTTAGAACACAAGGAACTCAAATGAGAAGAAAGATGTGGTTTC-A 799
Query 406 GAACATGAAGATAAAACTCATTGTCGTTGCAATCATCATTGCCTTGATTCTCATCATCAT 465
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 800 GAACATGAAGATAAAGCTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATCAT 859
Query 466 CCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGGCG 525
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CCTCTCAATTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGGCG 919
Query 526 TTGTGGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTTGT 585
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TTATCGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTTGT 979
Query 586 GCTACCtttttgttttgtttttgtttt 612
|||||||||||||||||||||||||||
Sbjct 980 GCTACCTTTTTGTTTTGTTTTTGTTTT 1006
Score = 226 bits (122), Expect = 5e-58
Identities = 153/168 (91%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 1309 TTTGTGGTTTCTAAATTCTCATGC--TATGCTTCTTCTTAGATTGTACTTCTTAAAATTG 1366
|||||| |||||| |||||||| | |||| |||||||||||||||||||||| |||||
Sbjct 1005 TTTGTGATTTCTATATTCTCATACTATATGTTTCTTCTTAGATTGTACTTCTTGAAATTT 1064
Query 1367 GTTTTGTATAGGCCATATATATTATACATATATGTATGAATGCTCGACAATTTGCAACAT 1426
||||||||||||| |||||||||||||||||||||||| ||| |||||||| ||||| |
Sbjct 1065 GTTTTGTATAGGCTATATATATTATACATATATGTATGCATGTTCGACAATCTGCAATGT 1124
Query 1427 TGCTATTGCTGGTACTGACACTAATTCTTGCGAACCAATATTTGGACG 1474
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1125 TGCTATTGCTGGTACTGACACTAATTCTTGCAAACCAATATTTGGACG 1172
> AT1G04750.1 | Symbols: VAMP7B, VAMP721, ATVAMP721, AT VAMP7B
| vesicle-associated membrane protein 721 | chr1:1331466-1333567
REVERSE LENGTH=1192
Length=1192
Score = 590 bits (319), Expect = 2e-167
Identities = 410/454 (90%), Gaps = 6/454 (1%)
Strand=Plus/Plus
Query 833 CCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGACAGATTCCTATG-GCTTTCTTGGAA 891
|||||||||||||||| ||||||||||||||||| || ||||| ||| |||| ||||||
Sbjct 332 CCTATTGTGTTGTTGCGGTTGATTCTGCTGGGAGGCAAATTCCCATGTCCTTT-TTGGAA 390
Query 892 CGAGTGAAGGAGGATTTTAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCC 951
|||| || || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 391 AGAGTAAAAGAAGATTTTAACAAGCGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCA 450
Query 952 AACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGAT 1011
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 451 AACAGCTTGAATAAGGAGTTTGGCTCTAAACTGAAAGAGCATATGCAGTATTGCATGGAT 510
Query 1012 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCTCAAGTGTCTGAAGTTAAAGGT 1071
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 511 CATCCTGATGAGATTAGCAAGCTTGCTAAGGTGAAGGCGCAAGTGTCAGAAGTTAAGGGT 570
Query 1072 GTTATGATGGAAAACATTGAGAAGGTTCTTGATCGTGGTGAGAAAATTGAGCTTCTGGTG 1131
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 571 GTAATGATGGAAAACATTGAGAAGGTTCTTGACCGTGGTGAGAAAATTGAGCTTTTGGTG 630
Query 1132 GACAAAACCGAAAACCTTCGTTCACAGGCGCAAGATTTCAGAACA-CAAGGAACTCAAAT 1190
|||||||||||||| ||||| |||||||| ||||||||||||||| || ||||| || ||
Sbjct 631 GACAAAACCGAAAATCTTCGCTCACAGGCACAAGATTTCAGAACAACA-GGAACGCAGAT 689
Query 1191 GAGAAGGAAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTTGCAATCATCAT 1250
|||||| ||||||||| |||||||||||||||||||||| || || || || ||||| ||
Sbjct 690 GAGAAGAAAGATGTGGCTTCAGAACATGAAGATAAAACTCATAGTGCTCGCCATCATTAT 749
Query 1251 TGC-CTTGATTCTCATCATCATCCTCTCGGTTTG 1283
|| || ||||||||||||| | ||||| |||||
Sbjct 750 CGCACT-GATTCTCATCATCGTGCTCTCAGTTTG 782
Score = 257 bits (139), Expect = 2e-67
Identities = 173/190 (91%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672
|||||||||||||||||||||||||||||||| ||||| || || || ||||| || |||
Sbjct 142 ATGGCGCAACAATCGTTGATCTACAGTTTCGTAGCTCGCGGCACGGTGATCCTCGTTGAG 201
Query 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 202 TTCACTGATTTCAAAGGTAATTTCACCTCAATCGCTGCTCAGTGCCTCCAGAAGCTTCCG 261
Query 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 262 TCTTCGAACAACAAGTTCACCTACAACTGCGACGGTCATACCTTCAATTACCTTGTCGAA 321
Query 793 AATGGATTCA 802
|||||||||
Sbjct 322 GATGGATTCA 331
> AT2G33110.1 | Symbols: ATVAMP723, VAMP723 | vesicle-associated
membrane protein 723 | chr2:14041038-14043358 REVERSE LENGTH=1379
Length=1379
Score = 553 bits (299), Expect = 2e-156
Identities = 424/481 (88%), Gaps = 22/481 (5%)
Strand=Plus/Plus
Query 833 CCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGACAGATTCCTATGGCTTTCTTGGAAC 892
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 657 CCTATTGTGTTGTTGCAGTTGATTCTGCTGGGAGGGAGATTCCTATGGCTTTCTTGGAAC 716
Query 893 GAGTGAAGGAGGATTTTAACAAGAGATATGGTGGTGGAAAGGCTGCAACTGCTCAAGCCA 952
| ||||||||||||||| | |||||||||||||||| |||||||||||||| |||||| |
Sbjct 717 GCGTGAAGGAGGATTTTTATAAGAGATATGGTGGTGAAAAGGCTGCAACTGATCAAGCAA 776
Query 953 ACAGCTTGAATAAAGAATTTGGGTCGAAACTGAAAGAGCATATGCAGTATTGCATGGATC 1012
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 777 ATAGCTTGAATAAAGAATTTGGGTCGAATCTGAAAGAGCACATGCAGTATTGCATGGATC 836
Query 1013 ATCCTGATGAGATTAGCAAGCTTGCTAAGG-TGAAGGCTCAAGTGTCTGAAGTTAAAGGT 1071
||||||||||||||||||| |||||||| | | ||| |||||||||||||||||||| ||
Sbjct 837 ATCCTGATGAGATTAGCAACCTTGCTAAAGCTAAAG-CTCAAGTGTCTGAAGTTAAAAGT 895
Query 1072 GTTA-TGATGGAAAACATTGAGAAGGTTCTTGATCGTGGTGAGAAAAT-TGAGCTTCTGG 1129
||| ||||||||||||||||||||||||||| ||||||| || | | |||| | ||||
Sbjct 896 -TTAATGATGGAAAACATTGAGAAGGTTCTTGCCCGTGGTGTGATA-TGTGAGATGCTGG 953
Query 1130 TGGACAAAACCGAAAACCTTCGTTCACAGGCGCAAGATTTC-AGA-ACACAAGGAACTCA 1187
| | | || || ||||| |||||| |||| | | | | ||| ||||||
Sbjct 954 -GTAGTTCA--GA--------GT-CACAGCCGCAAGCTTTCTATATAAA-AAG-AACTCA 999
Query 1188 AATGAGAAGGAAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTTGCAATCAT 1247
||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 1000 AATGAAAAGGAAGAAGTGGTTTCAGAACATGAAGATAAAACTCATTGTCCTTGCAATTAT 1059
Query 1248 CATTGCCTTGATTCTCATCATCATCCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATA 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CATTGCCTTGATTCTCATCATCATCCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATA 1119
Query 1308 A 1308
|
Sbjct 1120 A 1120
Score = 425 bits (230), Expect = 5e-118
Identities = 290/318 (91%), Gaps = 7/318 (2%)
Strand=Plus/Plus
Query 1 TCTCTACGCGTTTCAGCGTCAAGGCTTCTAGATCTCTAAAGC-TTCGTGCCCTCGCCGAT 59
||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 342 TCTCTACGCGTTTCAGCGTCAAGTTTTCTAGATCTCTAAAGCTTTCGTG--CTCGCCGAT 399
Query 60 ATAAATCTCTGAGATCGCTCCCGTAAAATCGAATCGGATTCGCGTCGTTTTTTAAGGaa- 118
|||||||||| | |||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct 400 ATAAATCTCTAATATCGGTCCCGTAAGATCGAATTAGATTCGCGTCGTTTTTTAAGGAAC 459
Query 119 -aaaaaaaTGGTGCAACAATCGTTAATCTACAGTTTCGTCGCTCGCGGTACCGTAATCCT 177
|||| ||||| |||||||||||| ||||||||||| |||||||||| |||||||||||
Sbjct 460 CAAAATAATGGCGCAACAATCGTTGTTCTACAGTTTCATCGCTCGCGGCACCGTAATCCT 519
Query 178 CGTCGAGTTCACAGATTTAAAAGGCAATTTCTCATCTGTCGCTGCTCAGTGCCTTGAGAA 237
|||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct 520 CGTCGAGTTCACAGATTTCAAAGGCAATTTCACATCTGTCGCTGCTCAGTACCTTGAGAA 579
Query 238 GCTTCCTTCCTCGAACAACAAGTTTACCTACAAC-GACGATGGTCATACGTTCAATTACC 296
||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 580 TCTTCCTTCCTCGAACAACAAGTTTACCTACAACTG-CGATGGTCATACGTTCAACGACC 638
Query 297 TCGTCGAAAATGGTTTCA 314
||||||||||||| ||||
Sbjct 639 TCGTCGAAAATGGATTCA 656
Score = 364 bits (197), Expect = 1e-99
Identities = 240/260 (92%), Gaps = 6/260 (2%)
Strand=Plus/Plus
Query 346 GTCACAGGCGCAAGATTTCAGA-ACACAAGGAACTCAAATGAGAAGGAAGATGTGG-TTC 403
||||||| |||||| |||| | | | || |||||||||||| |||||||| |||| |||
Sbjct 964 GTCACAGCCGCAAGCTTTC-TATATAAAAAGAACTCAAATGAAAAGGAAGAAGTGGTTTC 1022
Query 404 AAGAACATGAAGATAAAACTCATTGTCGTTGCAATCATCATTGCCTTGATTCTCATCATC 463
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1023 -AGAACATGAAGATAAAACTCATTGTCCTTGCAATTATCATTGCCTTGATTCTCATCATC 1081
Query 464 ATCCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ATCCTCTCGGTTTGTGGGGGATTCAACTGCGGTAAATAAGTCTGGAACATTTCTTCCCGG 1141
Query 524 CGTTGTGGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTT 583
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CGTTATCGACTGCGCTCTGTGCTTCCCAAGATCTCTGAGAATATCTTCATTCAGTTCGTT 1201
Query 584 GTGCTACCtttttgttttgt 603
||||| | ||| | ||||||
Sbjct 1202 GTGCTGC-TTTCT-TTTTGT 1219
Score = 268 bits (145), Expect = 9e-71
Identities = 175/190 (92%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 613 ATGGCGCAACAATCGTTGATCTACAGTTTCGTCGCTCGTGGTACCGTAATCCTTGTCGAG 672
|||||||||||||||||| ||||||||||| ||||||| || ||||||||||| ||||||
Sbjct 467 ATGGCGCAACAATCGTTGTTCTACAGTTTCATCGCTCGCGGCACCGTAATCCTCGTCGAG 526
Query 673 TTCACTGATTTCAAAGGCAATTTCACATCTATCGCTGCTCAGTGCCTCCAGAAGCTTCCT 732
||||| |||||||||||||||||||||||| |||||||||||| ||| |||| ||||||
Sbjct 527 TTCACAGATTTCAAAGGCAATTTCACATCTGTCGCTGCTCAGTACCTTGAGAATCTTCCT 586
Query 733 TCTTCTAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAATTACCTCGTCGAA 792
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 587 TCCTCGAACAACAAGTTTACCTACAACTGCGATGGTCATACGTTCAACGACCTCGTCGAA 646
Query 793 AATGGATTCA 802
||||||||||
Sbjct 647 AATGGATTCA 656
Score = 56.5 bits (30), Expect = 7e-07
Identities = 37/40 (93%), Gaps = 2/40 (5%)
Strand=Plus/Plus
Query 1354 CTTC-TTAAAATTGGTTTTGTATAGGCCATATATAT-TAT 1391
|||| || |||||||||||||||||||||||||||| |||
Sbjct 1298 CTTCTTTGAAATTGGTTTTGTATAGGCCATATATATGTAT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5