BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482253

Length=623
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   745    0.0  


> AT2G33180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast 
hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; 
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes 
- 14 (source: NCBI BLink). | chr2:14066463-14067467 
FORWARD LENGTH=670
Length=670

 Score =  745 bits (403),  Expect = 0.0
 Identities = 483/522 (93%), Gaps = 4/522 (1%)
 Strand=Plus/Plus

Query  1    AGTCGCCATGGAACTGGTGGCTCTTCCGATCCACCACCGTACGG-GTTTGTCAAAATTTC  59
            ||||||||||||||||||| |||||||||||||||||||||||| |   | | || ||||
Sbjct  10   AGTCGCCATGGAACTGGTGTCTCTTCCGATCCACCACCGTACGGCG-CCGCCGAATTTTC  68

Query  60   CACCACTTAAAACCGGATATCCATTAGTTAACCGGATTGGACTAGCTCTACGATTCAGCA  119
            |||||||  |||| ||| ||||| ||| |||||||||||||| |||||||||||||||||
Sbjct  69   CACCACTCGAAACTGGAAATCCAGTAGCTAACCGGATTGGACAAGCTCTACGATTCAGCA  128

Query  120  ATGTTAGAATGAGAAAGCCCGTGTATTTAGGAACGATCTTAAC-GAAGAAATCCAGAGCA  178
            ||||||||||||||||||||| ||||||||||||||||||| | | ||||||| ||||||
Sbjct  129  ATGTTAGAATGAGAAAGCCCGCGTATTTAGGAACGATCTTATCTG-AGAAATCAAGAGCA  187

Query  179  AGAACACTAACGACGACGGAAGCAGTTTCCGGCGGAGGAGTTTCGCTTCCGCCTCTGGAT  238
            |||||| |||||||| ||||||||||||||||  | ||||||||||||||||| ||||||
Sbjct  188  AGAACATTAACGACGGCGGAAGCAGTTTCCGGAAGTGGAGTTTCGCTTCCGCCGCTGGAT  247

Query  239  TTGACGGAGGATAATATCCATCTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC  298
            ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  248  TTGACTGAGGATAATATCCATTTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTC  307

Query  299  TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGGCCATTC  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  308  TTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGACCATTC  367

Query  359  GTTAAGATAAGTTTAAGAGGCAAGTTTTGGCATACACGTGCAATGGTTCTAGCTAGAATT  418
            |||| |||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct  368  GTTACGATAAGTTTAAGAGGCAAGTTTTGGCATACGCGTGCAATGGTTCTAGCTCGACTT  427

Query  419  GGGAACTACTTGAAACAGAGGATCCCTGAAATTTTGGAGGTTGAGATTGAAGATGAGAAG  478
            ||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct  428  GGGAACTACTTAAAACAGAGGATCCCTGAGATTTTGGAGGTTAATATTGAAGATGAAAAG  487

Query  479  CAACTCGATGATAGTCCTGCAAATTTCTAAATTTTCCATTTT  520
            |||||||||||||||||||||||||||||||| |||||||||
Sbjct  488  CAACTCGATGATAGTCCTGCAAATTTCTAAATCTTCCATTTT  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040019906


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5