BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482254
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33190.1 | Symbols: | F-box family protein with a domain of... 1650 0.0
> AT2G33190.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:14067972-14069111 FORWARD
LENGTH=1140
Length=1140
Score = 1650 bits (893), Expect = 0.0
Identities = 1070/1153 (93%), Gaps = 22/1153 (2%)
Strand=Plus/Plus
Query 11 CTAGAGATGATAATGGTTGGTCAAAGCTTTATCCTGATCTCTTGCGATCGATCTTCGAAA 70
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 5 CTAGAGATGATAATGGTTGGTCAAAGCTTTATCCTGATCTTTTGCGATCGATATTCGAAA 64
Query 71 GCTTAAGCTGCTTGGATTTTCATCGAGCAAGAACCGTTTGTTCAAACTGGTATGCCGTAT 130
|||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 65 GCTTGAGTTGCTTGGATTTTCATCGAGCAGGAACCGTTTGTTCAAACTGGTATGCCGTAT 124
Query 131 CTCGAACATGTCCTTTGTATCCATGGAGAATCGTAATCCGAGGTAAGAATTCTGTCTTGT 190
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 125 CTCGATCATGTCCTCTGTATCCATGGAGAATCGTATTCCGAGGTAAGAATTCTGTCTTGT 184
Query 191 TTGATCCAATACAAGACAAGATCTACACAAAAAATCTTCTTGGAATCGACTTCTCCAAAA 250
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 185 TTGATCCAATACAAGACAAGATCTACACCAAAAATCTTCTTGGAATCGACTTGTCCAAAA 244
Query 251 CT-CATTGTCTCGCTAGTTACGGTAATTGGATACTAATAGTTGATCTTCGTCTT-GATTT 308
| |||||||| |||||||| ||||||||||| ||||| || |||| |||| || |||||
Sbjct 245 -TCCATTGTCTTGCTAGTTATGGTAATTGGATCCTAATCGTAGATCCTCGT-TTAGATTT 302
Query 309 CCATCTCTTGAATGTGTTTACTCGAGAGAGGATCAATCTTCCTTCATTAGAGTCATCCCT 368
| | |||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 303 CTACCTCTTGAACGTGTTTACTCGCGAGACGATCAATCTTCCTTCATTAGAGTCATCGCT 362
Query 369 ACGTGGTGATCGTCCTTTTAGATTCATACG-AA--ATGACGACTTTGGATACTTCCTTGA 425
|||||||||||||||||||||||||||||| || ||||||| | ||||||||| |||||
Sbjct 363 ACGTGGTGATCGTCCTTTTAGATTCATACGAAATGATGACGAGTCTGGATACTTTCTTGA 422
Query 426 GCTCTACGGCACTAAGTTTCTCTTGACGTGGAACGATTTTAGGTTTGAAAAAACTGCTAT 485
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 423 GCTCTACGGCACCAAGTTTCTCTTGACGTGGAACGATTTTAGGTTTGAGAAAACTGCTAT 482
Query 486 TCTGTGGGTAAACGGGAGAAATGGAGATTACATCGTTGCTTGGGCTATCAAACAGTTTTA 545
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 483 CCTGTGGGTAAACGGGAGAAATGGAGATTACGTTGTTGCTTGGGCTATCAAACAGTTCTA 542
Query 546 TATCTTCTCATACAAGAAAATAGGAAATGATGATGTTGGTGATGGTAATGATGATAAGCG 605
||||||||||||||| |||||||| | | | |||| | |||||||||||||
Sbjct 543 TATCTTCTCATACAAAAAAATAGG--A--A--A------TGAT-G--ATGATGATAAGCG 587
Query 606 ATGGAGTATCACATGCACACAATGCGAGGATATGGCTTATAAAGATAACAAGCTTTATGT 665
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 588 ATGGAGTATCACATGCACACAATGTGAGGATATGGCTTATAAAGATAACAAGCTTTATGT 647
Query 666 GTATACTTTTGATCATTACATCAACATTTTTGATTTCTCTGGATATTGTCCTAAAGAAAC 725
|||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
Sbjct 648 GTATACATTTGATCATTACATCAACATTCTTGATTTCTCTGGAAATTCTCCTAAAGAACC 707
Query 726 CATGGAAGAAAACCCTTATCTTAATCATCCTTTTCGTTTCGTAGATACGATTTATAAGTT 785
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 708 CATGGAAGAAAACCCTTATCTTAGTCATCCTTTTAGTTTCGTAGATGCGATTTATAAGTT 767
Query 786 GAGACTTGCGGTCACAAGAGCAGGAGAGGTTCTAATCGTTCTGAGTATAGTAGGGTTAGA 845
|||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||
Sbjct 768 GAGACTTGCGGTCACAAGGGAAGGAAAGGTTCTAATCGTTCTGAGTTTAGTAGGGTTAGA 827
Query 846 TAAAAAGTTTTGCATCTACAAGCTGAATCTTAAGATTGGTGATTGGGAAATAGTAGAGTC 905
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TAAAAAGATTTGCATCTACAAGCTGAATCTTAAGATTGGTGATTGGGAAATAGTAGAGTC 887
Query 906 TTTGGGAGATGAAATGTTGATTTTTGGTCATAGGGTCACAATAAGAGCACCGGACAAAGA 965
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 888 CTTGGGAGATGAAATGTTGATTTTTGGTCATGGGGTCACAATAAGAGCACCGGACAAAGA 947
Query 966 TATTAGTGGCGGAGGACTCAAGAGTAATTCAATATGTTTCCTTTATGATGACCATTTGTC 1025
||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 948 TATTAGTGGGGGAGGACTCAAGAGTGATTCAATATGTTTTCTTTATGATGACTATTTGTC 1007
Query 1026 TGATCATCATCTTACAATGAAGACACAACCAATTTGCGGTGTGTTCGATCTTGCTACTAG 1085
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1008 TGATCATTATCTTACAATGAAGAGACAACCAATTTGCGGTGTGTTCGATCTTGCGACAAG 1067
Query 1086 TACAATCACATGGCATACAAGATTAGAAGATCTGTCTTCCAAGGTTTGTTGGTTTGTTCC 1145
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 1068 TACAATCACATGGCATACAAGATTAGAAGACCTGTCTTCGAAGATTTGTTGGTTTGTTCC 1127
Query 1146 AGGATATGCATAG 1158
||||| ||| |||
Sbjct 1128 AGGATGTGCTTAG 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5