BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482255
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-... 1461 0.0
AT3G52957.1 | Symbols: | Pseudogene of AT2G33200; F-box family... 254 2e-66
AT2G33190.1 | Symbols: | F-box family protein with a domain of... 113 3e-24
> AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-14070671
FORWARD LENGTH=1131
Length=1131
Score = 1461 bits (791), Expect = 0.0
Identities = 949/1025 (93%), Gaps = 12/1025 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAGAACTCGTTACGATTGGTCAAAACTTTGTCACGATCTTTTGCGATCGATACTC 60
||||| ||||||||||| |||||||| || |||||||||||| ||||||||| |||||||
Sbjct 1 ATGTCGAGAACTCGTTATGATTGGTCCAAGCTTTGTCACGATATTTTGCGATTGATACTC 60
Query 61 GAAAGCTTGCACTACAAGGATTATCATCGAGCAAGAACCGTTTGCTC-ACACTGGTACAC 119
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 GAAAGCTTGCACTACAAGGATTATCATCGAGCAAGAACCGTTTGCTCTA-ACTGGTACAC 119
Query 120 CGTTTCCTCAACATGTAAGCGACCTCTGTATCCATGGCGAATCTTATTCAACGAGAATTC 179
| |||| |||| |||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 120 AGCTTCCACAACGTGTAAGCGACCTCTGTATCCATGGCGAATCAAATTCAACAAGATTTC 179
Query 180 AACTTCACTCTTCGATCC-CGTAGAAGAAAAGATTCACGAAATTCAACTTCCCGGAATCG 238
|||||||||||||||||| | |||||| ||||| ||||||||||||| |||||||||||
Sbjct 180 AACTTCACTCTTCGATCCAAG-AGAAGACAAGATCCACGAAATTCAACATCCCGGAATCG 238
Query 239 AATTTTCCGATAGGTATGTTCTTGCTAGTTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
Query 299 GTTTAGATTTCTATCTTCTAAACGTG-TTT-ACTCGTGAGAGAATCAATCTTCCATCGAT 356
||||||| |||||||| || || || ||| |||||||||||||||||||||||||||||
Sbjct 299 GTTTAGAATTCTATCTCCTGAA--TGCTTTCACTCGTGAGAGAATCAATCTTCCATCGAT 356
Query 357 GGAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGAGTGGAAACATTTCAT 416
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 357 GGAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCAT 416
Query 417 CGAGCGTACGGACATAAACTCCAACAAGAAACAAGCTTGTCTTTGGATAAATGAGAGAAC 476
||||||||| ||||| | ||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 417 CGAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAAC 476
Query 477 AGGGGATTATGTTGTAGCTTGGAGTATCAAACAGTACTACTTGTTCACTTACAAGAAAGG 536
||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 477 AGGGGATTATGTTGTGGCTTGGAGTATCAAACAGCACTATTTGTTCACTTACAAGAAAGG 536
Query 537 AGATGATTCATGGTTGAATCTTGAAGACACTAAGTGTGTGTCTATGGCTTTGAATAAGGA 596
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 AGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTGAATAAGGA 596
Query 597 CTACAAGCTTTATGTGTATACATTAGATAACTCGATCAAGATTTTTGATTTATCTGGTGA 656
||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||
Sbjct 597 CTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGTGA 656
Query 657 GTTTCCTAGTGAGATTGTCGAAGG-GAATCCGTATCGTAACCATCCGTTTAGCTTTCGGG 715
||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 657 GTTTCCTAGTGAGATTGTCGA-GGAGAATCCGTATCGCAACCATCCGTTTAGCTTTCGGT 715
Query 716 TTGTTTCGAAACCCGGGGAATACGCTTGGAGGCAGATTGTAGCGGTTACAAACTCTGGAG 775
|||||||||| |||| |||| ||||||||| |||| |||||||| |||| ||||||||||
Sbjct 716 TTGTTTCGAAGCCCGAGGAACACGCTTGGAAGCAGGTTGTAGCGATTACTAACTCTGGAG 775
Query 776 AGGTTTTGATGATCGTGAGCTTGAAAGGGTTAGATA-ATAAACGTTTGTTTTACATCTAT 834
|||||||||||||||||||||| ||||||||||| | |||| ||||||||||| || |||
Sbjct 776 AGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGA-AGATAAGCGTTTGTTTTATATATAT 834
Query 835 AAGATGAATTTGGGAAGTTGTAATTGGGAAAGAGTAGATTCTCTTGGAGGTGAGATGTTG 894
|||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 835 AAGATGGATTTTGGAAGTTGTAACTGGGAGAGAGTAGATTCTCTTGGAGGTGAGATGTTG 894
Query 895 ATATTTGGTCATGGGGTCACAATAAGAGCACCGATCTTAGATAGTAATGGATTGGGAATC 954
||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||
Sbjct 895 ATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGATATTAATGGTTTGGGAATC 954
Query 955 AAGAGTGATTCAATCTGCTTCCACGGTGATGATCTTTGGCCAGTTAGTCATCTTTTTAAT 1014
||||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||| |
Sbjct 955 AAGAGTGATTCAATCTGTTTCCGCGGTGATGATCTTTGGCCACTTAGTCAGCTTTTTATT 1014
Query 1015 CCCAT 1019
|||||
Sbjct 1015 CCCAT 1019
> AT3G52957.1 | Symbols: | Pseudogene of AT2G33200; F-box family
protein | chr3:19638399-19639278 REVERSE LENGTH=880
Length=880
Score = 254 bits (137), Expect = 2e-66
Identities = 375/483 (78%), Gaps = 43/483 (9%)
Strand=Plus/Plus
Query 451 GCTTGTCTTTGGATAAATGAGAGAACAGGGGATTATGTTGTAGCTTGGAGTATCAAACAG 510
|||||| |||||||||| ||||||||| |||||||||||||||||| | || | || |
Sbjct 421 GCTTGTTTTTGGATAAACGAGAGAACAAAGGATTATGTTGTAGCTTGTATTACCGAAGAA 480
Query 511 TACTACTTGTTCACTTACAAGAAAGGAGATGATTCA-TGGTTGAATCTTGAAGACACTA- 568
||| |||||||| |||||||| | |||||||| | |||| |||| ||||||||| ||
Sbjct 481 AACTGTTTGTTCACATACAAGAATGAAGATGATT-ATTGGTGGAATGTTGAAGACA-TAT 538
Query 569 AGTGTGT-GTC-TATGGCTTTGAATAAGGACTACAAGCTTTATGTGTATAC-ATTAGATA 625
| | ||| | ||| | || |||| ||| | ||||||||||||||||| ||| ||||
Sbjct 539 A-T-TGTACACACATGAC-TT--ATAAAGACGATAAGCTTTATGTGTATACAATT-GATA 592
Query 626 ACT-CGATCAAGATTTTTGATTTATCTGGTGAG-TTT-CCTAGTGAGATTGTCGAAGGGA 682
|| | ||||||| ||||||| ||| | ||| ||| || | || || ||| |||| |
Sbjct 593 GCTAC-ATCAAGA--CTTGATTTCTCT-G-GAGCTTTCCCAAAAGAAATCGTCCAAGGAA 647
Query 683 ATCCGTATCGTAACCATCCGTTTAGCTTTCGGGTTGTTTCGAAACCCGGGGAATACGCTT 742
| ||||| ||| ||||||||||| ||||| | | | ||| |||||||||| |
Sbjct 648 ACCCGTACCGTGACCATCCGTTTTGCTTT---G--ATAAC-CAACTTGGGGAATACGGTG 701
Query 743 GG-AGGCAGATTG-TAGCGGTTACAAACTC--TGGAGAGGTTTTGAT-GATCGTGAGC-T 796
|| || | || | | ||| |||| ||||| | | || |||||||| | | |||||| |
Sbjct 702 GGAAGAC-GA-GGATTGCGATTACGAACTCAAT-G-GATGTTTTGATCGCT-GTGAGCAT 756
Query 797 TGAAAGGGTTAGATAA-TAAACGTTTGTTTTACATCTAT-AAGATGAATTTGGGAAGTTG 854
| ||| ||||| | || | ||| ||||||||||||| | ||||||||||| | |||| |
Sbjct 757 T-AAACGGTTACAAAACT-CACGCTTGTTTTACATCT-TCAAGATGAATTTTGAAAGTAG 813
Query 855 TAATTGGGAAAGAGTAGATTCTCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTCAC 914
||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 814 TAACTGGGAAAGAGTACATTCTCTTGGAGGTGAGTTGTTGATATTTGGTCATGGGGTCAC 873
Query 915 AAT 917
|||
Sbjct 874 AAT 876
> AT2G33190.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:14067972-14069111 FORWARD
LENGTH=1140
Length=1140
Score = 113 bits (61), Expect = 3e-24
Identities = 123/151 (81%), Gaps = 12/151 (8%)
Strand=Plus/Plus
Query 824 TTTACATCTATAAGATGAAT-TTGGGAAG-TT-GTAATTGGGAAAGAGTAGATTCTCTT- 879
||| |||||| ||| ||||| || ||| || || ||||||||| |||||| || |||
Sbjct 836 TTTGCATCTACAAGCTGAATCTT---AAGATTGGTGATTGGGAAATAGTAGAGTC-CTTG 891
Query 880 GGAGGTGAGATGTTGATATTTGGTCATGGGGTCACAATAAGAGCACC-GATCTTAGATAG 938
|||| ||| |||||||| ||||||||||||||||||||||||||||| || | |||||
Sbjct 892 GGAGATGAAATGTTGATTTTTGGTCATGGGGTCACAATAAGAGCACCGGA-CAAAGATAT 950
Query 939 TAATGGATTG-GGAATCAAGAGTGATTCAAT 968
|| ||| | ||| ||||||||||||||||
Sbjct 951 TAGTGG-GGGAGGACTCAAGAGTGATTCAAT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5