BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482256
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33205.1 | Symbols: | Serinc-domain containing serine and s... 1869 0.0
> AT2G33205.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr2:14070987-14073211
REVERSE LENGTH=1269
Length=1269
Score = 1869 bits (1012), Expect = 0.0
Identities = 1202/1289 (93%), Gaps = 31/1289 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGATCAGCGGAAGCTGCTACACGGATGAGACCATTGCAGATCAGTCCTGGTGAT 60
|||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGAATGGATCAGCGGAA---GCTACACGGACAAGACCATTGCAGATCAGTCCCGGTGAT 57
Query 61 TTAGAGGCTGCTCATCTAGATGAACTCATAAGGGAAATAGAACAGAGGAGTCTCTTTTAC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 58 TTAGAGGCTGCTCATCTAGATGAACTCATAATGGAAATAGAACAGAGGAGTCTCTATTAT 117
Query 121 TACCAAGAGAAAAACAAGTCTTTGAGAGCTCGTTATGTCTACGGGACCATCTTCTTGATT 180
|||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||
Sbjct 118 TACCAAGAGAAAAACAAGTCCTTGAGAGCTCGTTATACCTACGGAACCATTTTCTTGATC 177
Query 181 ATAAACT-TATGCGCTTGGTTTATTCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 239
||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 ATAAA-TCTATGCGCTTGGTTTATCCGTGACTACGCACAAAAGGCTCTGGCCTTGCTTCC 236
Query 240 --AT-T----ATTTGTGGACCAGAAGGAAGTCATTGTTTCCATACGCTTGGAGTACTTCG 292
|| | | |||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 237 ATATGTCAGCAGTTGTGGACCAGAAGGAAGTCGTTGTTTCCATACGCTTGGAGTACTCCG 296
Query 293 CGTTTTATGTATCCTTAACAATG-AAGATATTTTACTTTCTTATGTTCCTCTCAACATGG 351
|| | | | | || | ||| |||||||||||| ||||||||||||||||||||
Sbjct 297 CG--TGA-G--T--TT-AGGATGTTTCATATTTTACTTTGTTATGTTCCTCTCAACATGG 348
Query 352 AACACAATGAAACTCCACGAAGCTCAAAACAGTTGGCACTCGGATAATTGGATCTTCAAG 411
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 349 AACACAATGAAACTCCACGAAGCTCAAAACAGCTGGCACTCGGATAATTGGATCTTTAAG 408
Query 412 TTTTTTCTGCTGGTTTTAGCCATGGTAGCTTCTTTCTTCATACCTCAGCTTTACATCCAA 471
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TTTTTTCTACTGGTTATAGTCATGGTAGCTTCTTTCTTCATACCTCAGCTTTACATCCAA 468
Query 472 ATTTACGGGGAAATCGCGCGAGTTGGTGCAGGGATATTTCTTGGTCTTCAACTTGTAAGT 531
||||| || |||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 469 ATTTATGGAGAAATCGCTCGTGTTGGTGCAGGGATATTTCTTGGTCTGCAACTTGTAAGT 528
Query 532 GTTATCGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCATGACCAAAGTAAGCAA 591
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 529 GTTATCGAATTCATCACTTGGTGGAATAACTATTGGATGCCTCAAAACCAAAGTAAGCAA 588
Query 592 AGCTGCTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATC 651
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGCTGTTCTTTTGGTTTGGTCATGTCAATAGTTTTCTACATCGGTTCTGTTTGCGGGATC 648
Query 652 GCAGTGATGTACTACTTTTATGCAGCTTCGACTGCTTGTGGCCTCAATATATTCTTTATC 711
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 649 GCAGTGATGTACTACTTTTATGGAGCTTCTACTGCTTGTGGCCTCAATATATTCTTCATC 708
Query 712 TCATGGACTGTTGTTCTTTTAATCGTTATGATGGTTATGTCCTTGCATTCAAAGGTAAAG 771
|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 709 TCATGGACTGTTATACTTTTAATCGTTATGATGGTTATTTCCTTGCATTCAAAGGTGAAG 768
Query 772 AATAGAGGACTTTTGTCTTCTGGGATTATGGCTTCCTACATTGTCTTCCTATGTTGGTCT 831
|||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 769 AATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCT 828
Query 832 GCGATCAGAAGCGAACCTTCACATACAAAATGCAATGCGCATACTCAAAACGGTCATACT 891
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 829 GCGATCAGAAGCGAACCTTCACATACAAAATGCAATGCGCATACTCAAAACAGCCATACT 888
Query 892 GATTGGATTACAATACTGAGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTC 951
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATTGGACTACAATACTGAGTTTCCTTATAGCTATAGGCGCCATTGTGATGGCAACATTC 948
Query 952 TCAACCGGGATCGATTCAGAATCCTTCAGGTTCGAGTTCCGTAAAGATGAAGCGAAAGAA 1011
|||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 949 TCAACCGGGATCGATTCAGAATCCTTCAGG-T----TT-CGTAAAGATGAAGCGAAAGAA 1002
Query 1012 GAAGACGATATACCATACAGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GAAGACGATATACCATACAGCTATGGATTCTTCCACCTTGTGTTCTCCTTAGGAGCAATG 1062
Query 1072 TACTTTGCTATGTTGTTTATCAGCTGGAACCTTTCACATTCAGCTCA-A-AAATGGAGCA 1129
||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 1063 TACTTTGCTATGTTGTTTATCAGCTGGAACCTTTCACATTC--CACAGAGAAATGGAGCA 1120
Query 1130 TTGATGTTGGTTGGACAAGCACATGGGTGAAGATAGTGAACGAGTGGTTTGGCGCAGCGA 1189
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1121 TTGATGTTGGATGGACAAGCACATGGGTGAAGATAGTGAACGAGTGGTTTGCCGCAGCGA 1180
Query 1190 TTTACCTTTGGAAGTTGATTGGTCCTATTGTGAGACAGCCTAGAGTTCACGAACAACCTC 1249
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1181 TTTACCTTTGGAAGTTGATTGCTCCTATTGTGAGACAGCATAGAGTTCACGAACAACCTC 1240
Query 1250 AGCCAACAGCAGCAGAAGTGGACAGATAG 1278
||||||||||||||||||| ||||||||
Sbjct 1241 AGCCAACAGCAGCAGAAGTTCACAGATAG 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5