BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482264
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33270.1 | Symbols: ACHT3 | atypical CYS HIS rich thioredox... 1343 0.0
> AT2G33270.1 | Symbols: ACHT3 | atypical CYS HIS rich thioredoxin
3 | chr2:14103543-14105204 FORWARD LENGTH=960
Length=960
Score = 1343 bits (727), Expect = 0.0
Identities = 877/947 (93%), Gaps = 19/947 (2%)
Strand=Plus/Plus
Query 1 GCTTTTGAGGGTTGGGAGAGAGTAGAAGAGAAATATCAAATTTCCCTTCaaaa---aaaC 57
||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCTTTCGAGGGTGGGGAGAGAGTAGAAGAGAAATATCAAATTTCCCTTCAAAAGCCTCTC 60
Query 58 C-CTC-----TCAAG-TTTTTT-CTTGGATGTCACATGTTTCATGTGGAACAAGGCAGTT 109
| ||| ||||| |||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 61 CTCTCTTTGTTCAAGTTTTTTTCCTTGGATGT-GCATGTTTCTTGTGGAACAAGGCAGTT 119
Query 110 CTGTTTTTAAGTAAAAGTCATGGCGACAGATTCGTTCATCAAGTTAAATCCAATTTCCAT 169
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 120 CTGTTTTTAAGTAAAATTCATGGCGACGGATTCGTTCATCAAGTTAAATCCAATTTCCTT 179
Query 170 TAACCGTCCCCGCTTCAACCTCAGAGAGTTTGCTGGCATAAGTCCTAAAAGCATCTCTTC 229
||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 180 TAACCGTGCCCGCTTCGACCTCCGAGATTTTGCTGGCATAAGTCCTAAAAGCATCTCTTC 239
Query 230 TTTGTGCTGCATTAGCCCAAGAATGATATCTTGCAACCATTTCAGCCCGAGAACATTGAT 289
| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTGTGTTGCATTAGCCCAAGATTGATATCTTGCAACCATTTCAGCCCGAGAACATTGAT 299
Query 290 CTCCGGCGAGAATGATATCATATTGTTTCCCAAGAAAAAGATCCCCGCGTTTGTCCGATG 349
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 ATCCGGCGAGAATGGTAACATATTGTTTTCCAAGAAAAAGATCCCCGCGTTTGTCCGATG 359
Query 350 TCAGACAAGTCTTGGGATTGGAAGGAACCAAAAATGGTGGGAGAAGGAACTGCAACCGAA 409
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 360 TCAGACAAGTCTTGGGATCGGAAGGAACCAAAAATGGTGGGAGAAGGAATTGAAACCGAA 419
Query 410 CATGAAGTCGGTGACATCACCGGAAGATCTTGTCGGT-TCTTTACGTAACGCCGGAGATA 468
|||||||||||| ||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct 420 CATGAAGTCGGTTACATCACCGCAAGATCTTGTC-GTCTCTTTACGTAACGCTGGAGATA 478
Query 469 AACTTTTCGTTGTGGATTTCTTCTCACCTAGCTGTGGTGGCTGCAAAGCTCTTCATCCCA 528
||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 479 AACTTGTCGTTGTTGATTTCTTCTCGCCTAGTTGTGGTGGCTGCAAAGCTCTTCATCCCA 538
Query 529 AGATATGTAAAATTGCAGAGAAGAATCCGGAAGTAGAGTTTCTACAAGTGAATTATGAAG 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGATATGTAAAATTGCAGAGAAGAATCCGGAAGTAGAGTTTCTACAAGTGAATTATGAAG 598
Query 589 ACCATAGAAGTTTATGTCAAAGTCTTAACGTTCATGTTCTTCCCTTCTTCCGCTTCTACC 648
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 599 AACATAGAAGTTTATGTCAAAGTCTTAACATTCATGTTCTTCCCTTCTTCCGCTTCTATC 658
Query 649 GCGGTTCCTCAGGCCGCGTTTGCAGCTTCAGTTGTACTAATGCCACGATAAAGAAATTCA 708
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 GTGGTTCCTCTGGCCGCGTTTGCAGCTTCAGTTGTACTAATGCCACGATAAGGAAATTCA 718
Query 709 AGGAGGCATTAGAGAAGCATGGGAGGGAGCAATGTAGCATTGGAGAAACAAAGGGGCTTG 768
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGAAGCGTTGGAGAAGCATGGGAGGGAGCAATGTAGCATTGGAGAAACAAAGGGGCTTG 778
Query 769 AGGAGAAAGAACTTGTCGCCATGGCTGCAAATAAAGACCTATCGTTCGATTATAAATCCA 828
|||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||
Sbjct 779 AGGAGAAAGAACTTGTCGCCATGGCTGCAAATAAAGACTTGTCATTCGATTATAAACCCA 838
Query 829 AATCGAT-TGGAAATAGCCAAGAGCAAAAAGAA-AAAGATATATTTCTCCCAAAATCTCC 886
|||| | |||||||| ||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 839 CATCG-TGTGGAAATATCCAAGAGCAAAAA-AAGAAAGAAATATTTCTCCCGAAATCTCC 896
Query 887 AACTTCGAATAAACAAAAAGAAGTAGAACATTCTCTACTAGTTAGTT 933
||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 897 AACTTTTAATAAACAAAAAGAAGTAGAACATTCTCTACTACT-AGTT 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5