BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482270
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33310.2 | Symbols: IAA13 | auxin-induced protein 13 | chr2:... 1884 0.0
AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional reg... 429 3e-119
AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible 1... 111 1e-23
AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein... 84.2 3e-15
> AT2G33310.2 | Symbols: IAA13 | auxin-induced protein 13 | chr2:14114281-14115969
REVERSE LENGTH=1244
Length=1244
Score = 1884 bits (1020), Expect = 0.0
Identities = 1171/1241 (94%), Gaps = 22/1241 (2%)
Strand=Plus/Plus
Query 125 AAATCctctctctgtctccttctgtttgtttgttttcttgtttccttctctctctctctc 184
|||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1 AAATCCTCTCTCTGTCTCTTTCTGTTTGTTTGTTTTCTTGTTTCC-T-TCTCTCTCTCTC 58
Query 185 tctctctttctttgtcttcctttccca-g--g--tttttttgctctctctgctttcttga 239
| | ||||||||||||||||||||||| | | |||||||||||||||||| |||||||
Sbjct 59 T-T-TCTTTCTTTGTCTTCCTTTCCCAGGTTGTTTTTTTTTGCTCTCTCTGCCTTCTTGA 116
Query 240 ctttcaaaagactctttctttcttttgggttgattttgGATTCTAGGGCTCTC-TGCTTT 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 117 CTTTCAAAAGACTCTTTCTTTCTTTTGGATTGATTTTGGATTCTAGGGCTCTCTTTCTTT 176
Query 299 TAGTGGGTTTttgttcttgttgttgttgttgtGAAT-TTTCTGATGATTACTGAGCTTGA 357
||||||||||||| |||||||||||| || | | | ||||||||||||||| |||||
Sbjct 177 TAGTGGGTTTTTG---TTGTTGTTGTTG-TG-G--TCTCTCTGATGATTACTGAACTTGA 229
Query 358 GATGGGGAAAGGTGAGAGTGAGCTTGAGCTTGGTCTAGGGCTGAGTCTCGGCGGTGGAAC 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 230 GATGGGGAAAGGTGAGAGTGAGCTTGAGCTTGGTCTAGGGCTGAGTCTTGGCGGTGGAAC 289
Query 418 GGCGGCCAAGAATGGTAAATCAGGTGGTGGTGGCGCGTGGGGAGAGCGTGGGAGGCTTTT 477
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 290 GGCGGCCAAGATTGGTAAATCAGGTGGTGGTGGCGCGTGGGGAGAGCGTGGAAGGCTTTT 349
Query 478 GACGGCTAAGGATTTTCCTTCTGTTGGTTCTAAACGAGCTGCTGATTCTGCTTCTCATGC 537
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 350 GACGGCTAAGGATTTTCCTTCTGTTGGTTCTAAACGTGCTGCTGATTCTGCTTCTCATGC 409
Query 538 TGGTGCATCTCCTCCTCGTTCAAGCAGTCAAGTTGTGGGATGGCCTCCTGTAGGGTCACA 597
|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 410 TGGTTCATCTCCTCCTCGTTCAAGCAGTCAAGTTGTTGGATGGCCTCCTATAGGGTCACA 469
Query 598 TAGGATGAACAGTTTGGTTAATAACCAAGCTACGAAA-TCTGCGAGGgaagaagaagaag 656
|||||||||||||||||||||||||||||||| ||| || || || |||||||||||||
Sbjct 470 CAGGATGAACAGTTTGGTTAATAACCAAGCTAC-AAAGTCAGCAAGAGAAGAAGAAGAAG 528
Query 657 ctgggaaaaagaaagtgaaagacgatgaacctaaagatgtgacaaagaaagTGAATGGGA 716
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 529 CTGGTAAGAAGAAAGTGAAAGATGATGAACCTAAAGATGTGACAAAGAAAGTGAATGGGA 588
Query 717 AAGTGCCAGTTGGGTTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGGAAAGTGG 776
|||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 AAGTACAAGTTGGATTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGAAAAGTGG 648
Query 777 ATTTGAATGCTCATTCTTCTTACGAGAATTTGTCGCAAACATTGGAAGATATGTTCTTTC 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 649 ATTTGAATGCTCATTCTTCTTACGAGAATTTGGCGCAAACATTGGAAGATATGTTCTTTC 708
Query 837 GCACTAATCCGGGTACTATCGGGTTAACCAGTCAGTTCACTAAACCATTGAGGCTGTTAG 896
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 709 GCACTAATCCGGGTACTGTCGGGTTAACCAGTCAGTTCACTAAACCGTTGAGGCTTTTAG 768
Query 897 ATGGATCGTCTGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTG 956
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 769 ATGGATCGTCTGAGTTTGTACTTACTTATGAAGATAAGGAAGGAGATTGGATGCTTGTTG 828
Query 957 GCGATGTTCCATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAACCT 1016
| ||||||||||||||||||||||||| ||| ||||||||||| || || ||||||||||
Sbjct 829 GTGATGTTCCATGGAGAATGTTCATCAACTCGGTGAAAAGGCTACGTGTGATGAAAACCT 888
Query 1017 CTGAAGCTAATGGACTCGCTGCACGAAATCAAGAACCAAACGAGAGACAACGAAAGCAGC 1076
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 889 CTGAAGCTAATGGACTCGCTGCACGAAATCAAGAACCAAACGAGAGACAGCGAAAGCAGC 948
Query 1077 CGGTTTAGTTCTCTTTCCCACGTTACGCTGTTACAGGttttcttttttttggtttttGCA 1136
|||||||| ||||||| | |||||||| ||||||||||||| | |||| || |||||||
Sbjct 949 CGGTTTAGATCTCTTTTCGACGTTACGGTGTTACAGGTTTT-ATATTTTGGGGTTTTGCA 1007
Query 1137 AGTCTGAGATACTTCTGAAGCAAGCATAAGCTAGATTGATCTTATATCCAGTTTGTGTAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AGTCTGAGATACTTCTGAAGCAAGCATAAGCTAGATTGATCTTATATCCAGTTTGTGTAT 1067
Query 1197 TTTCTTGGTTCTTCTAATGGTGTTTACTGGTTTTCTTTAG-GtttttttttGCTGTCTTT 1255
||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1068 TTTCTTGGTTCTTATAATGGTTTTTACTGGTTTTCTTTAGTTTTTTTTTTTGCTGTCTTT 1127
Query 1256 TAAATTTCGGTTGCGATTTCACTATATACTATGGATGGAAGAGAATGCTCTTTATATCTT 1315
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TAATTTTCGGTTGCGATTTCACTATATACTATGGATGGAAGAGAATGCTCTTTATATCTT 1187
Query 1316 TTACTACACTGTAAATATTTGAAGCTTATCTAATATCGTTT 1356
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TTACTACACTGTAAATATTTGAAGCTTATCTAATATCGTTT 1228
> AT1G04550.2 | Symbols: IAA12, BDL | AUX/IAA transcriptional regulator
family protein | chr1:1240375-1242121 FORWARD LENGTH=1238
Length=1238
Score = 429 bits (232), Expect = 3e-119
Identities = 530/668 (79%), Gaps = 43/668 (6%)
Strand=Plus/Plus
Query 443 GGTGGTGGCGCGTGGGGAGAGCGTGGGAGGCTT-TTGACGGCTAAGGATTTTCCTTCTGT 501
||||||||||||||| ||||||||||||| || || || ||||||||||||||||| ||
Sbjct 292 GGTGGTGGCGCGTGGAAAGAGCGTGGGAGGATTCTT-ACTGCTAAGGATTTTCCTTCCGT 350
Query 502 TGGTTCTAAACGAGCTGCTGATTCTGCTTCTCATGC-TGGTGCATCTCCTCCTCGTTCAA 560
||| |||||||| ||||||| ||| | ||||| | || || |||||||||||||| |
Sbjct 351 TGGGTCTAAACGCTCTGCTGAATCTTCCTCTCA-CCAAGGAGCTTCTCCTCCTCGTTC-A 408
Query 561 GCAGTCAAGTTGTGGGATGGCCTCCTGTAGGGTCACATAGGATGAACAGTTTGGTTAATA 620
|||||||| || |||||||| || | |||| ||| ||||||||||||||||||||||
Sbjct 409 --AGTCAAGTGGTAGGATGGCCACCAATTGGGTTACACAGGATGAACAGTTTGGTTAATA 466
Query 621 ACCAAGCTACGAAATCTGC--GAG-Ggaagaagaagaagctgggaaaaagaaagt-ga-a 675
||||||||| ||| | || ||| |||||||| ||| | |||| || |||||| | |
Sbjct 467 ACCAAGCTATGAAGGCAGCAAGAGCGGAAGAAGGAGACG--GGGAGAA-GAAAGTTGTGA 523
Query 676 agac-gatgaac-ctaaagatgtgacaaagaaagTGAATGGGAAAGTGCCAG---TT-GG 729
||| ||||| | | ||||||||| ||| ||| |||||| |||||| | || || ||
Sbjct 524 AGAATGATGAGCTC-AAAGATGTGTCAATGAAGGTGAATCCGAAAGTTC-AGGGCTTAGG 581
Query 730 GTTTATTAAGGTGAACATGGATGGAGTTGCTATAGGAAGGAAAGTGGATTTGA-ATGCTC 788
|||| |||||||||| ||||||||||||| |||||| || ||||||||| ||| | ||||
Sbjct 582 GTTTGTTAAGGTGAATATGGATGGAGTTGGTATAGGCAGAAAAGTGGATATGAGA-GCTC 640
Query 789 ATTCTTCTTACGAGAATTTGTCGCAAACA-TTGGAAGATATGTTCTTTCGCACTAATCCG 847
|||| |||||||| || ||| | || || ||| | || ||||||||| | | | | | |
Sbjct 641 ATTCGTCTTACGAAAACTTGGCTCAGACGCTTG-AGGAAATGTTCTTTGGAA-TGA-CAG 697
Query 848 GGTACTATCGGGTTAACCAGTCA-GTTCACTAAACCATTGAGGCTGTTAGATGGATCGTC 906
| ||||| | || | || | | | |||||| || ||||| ||||||||||| ||
Sbjct 698 G-TACTA-CTTGT---CGAGAAAAGGT---TAAACCTTTAAGGCTTTTAGATGGATCATC 749
Query 907 TGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCC 966
|| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 750 AGACTTTGTACTCACTTATGAAGATAAGGAAGGGGATTGGATGCTTGTTGGAGATGTTCC 809
Query 967 ATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAACCTCTGAAGCTAA 1026
|||||||||||| |||| ||| ||||||||||||||| | ||| |||||| |||||||
Sbjct 810 ATGGAGAATGTTTATCAACTCGGTGAAAAGGCTTCGGATCATGGGAACCTCAGAAGCTAG 869
Query 1027 TGGACTCGCTGCACGAAATCAAGAACCA-AACGAGAGACAACGAAAGCAGCCG-GTTTAG 1084
|||||| ||| || || |||||| | | || || |||||| |||| || || ||||||
Sbjct 870 TGGACTAGCTCCAAGACGTCAAGAGC-AGAAGGATAGACAAAGAAA-CAACCCTGTTTAG 927
Query 1085 -TTCTCTT 1091
||| |||
Sbjct 928 CTTCCCTT 935
> AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible
11 | chr4:14142135-14143969 FORWARD LENGTH=1103
Length=1103
Score = 111 bits (60), Expect = 1e-23
Identities = 111/136 (82%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 895 AGATGGATCGT-CTGAGTTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTG 953
|||||| || | | || || ||||| || |||||||| ||||||||||||||||||||||
Sbjct 738 AGATGGGTCTTCCGGA-TTAGTACTAACGTATGAAGACAAGGAAGGAGATTGGATGCTTG 796
Query 954 TTGGCGATGTTCCATGGAGAATGTTCATCACCTCAGTGAAAAGGCTTCGGGTTATGAAAA 1013
||||||||||||| ||| | ||||| || ||||||| |||||| ||| | |||||||
Sbjct 797 TTGGCGATGTTCCGTGGGGGATGTTTATTGGTTCAGTGAGAAGGCTCCGGATAATGAAAA 856
Query 1014 CCTCTGAAGCTAATGG 1029
| || || |||| |||
Sbjct 857 CATCGGAGGCTACTGG 872
> AT2G22670.4 | Symbols: IAA8 | indoleacetic acid-induced protein
8 | chr2:9636380-9638745 FORWARD LENGTH=1630
Length=1630
Score = 84.2 bits (45), Expect = 3e-15
Identities = 58/64 (91%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 911 TTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCATGG 970
||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1177 TTTGTGCTTACTTATGAAGATAAAGACGGTGATTGGATGCTTGTTGGCGATGTTCCATGG 1236
Query 971 -AGA 973
|||
Sbjct 1237 GAGA 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5