BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482274
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33340.1 | Symbols: MAC3B | MOS4-associated complex 3B | ch... 2608 0.0
AT1G04510.1 | Symbols: MAC3A | MOS4-associated complex 3A | ch... 1450 0.0
> AT2G33340.1 | Symbols: MAC3B | MOS4-associated complex 3B |
chr2:14126217-14131153 REVERSE LENGTH=2098
Length=2098
Score = 2608 bits (1412), Expect = 0.0
Identities = 1535/1595 (96%), Gaps = 6/1595 (0%)
Strand=Plus/Plus
Query 1 TTCCCGGCTTCCGCGATTTTGCTTTG-AGGCGCCGGACCGGAGAAGATAAAACCCTAGCT 59
||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 23 TTCCCGGCTTCCGCGTTTTTGCTTTGTA-GCGCCGGACCGGAGAAGATAAAACCCTTGCT 81
Query 60 CCGCCCCACTCACAGGGAGTTCTACGCCCACCTGAGTTCTTGTGCTTCGTCGTATTACTC 119
|||||||||||||||| |||||||| | ||||||||||| || ||||||||||| ||||
Sbjct 82 CCGCCCCACTCACAGGAAGTTCTACATCGACCTGAGTTCTCGTACTTCGTCGTATCACTC 141
Query 120 GTTCTTTCTACGATGAACTGTGCAATTTCCGGAGAAGTTCCCAAGGAGCCAGTGGTTTCG 179
|||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 142 GTTCTTCCTACGATGAACTGTGCAATTTCAGGAGAAGTTCCCGTGGAGCCAGTGGTTTCG 201
Query 180 ACCAAGTCAGGTTTGCTCTTCGAGAGACGATTAATCGAAAGGCATATATCGGATTATGGG 239
|| |||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 202 ACGAAGTCAGGATTACTCTTCGAGAGACGACTAATCGAAAGACATATATCGGATTATGGG 261
Query 240 AAGTGCCCTGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGG 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 AAGTGCCCGGTTACTGGCGAACCACTTACCATTGATGACATTGTTCCCATCAAAACTGGG 321
Query 300 GAGATCATAAAGCCGAAAACATTGCATACAGCTAGCATCCCTGGATTGCTCGGAACGTTC 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 GAGATCATAAAGCCGAAAACATTGCATACAGCTAGTATCCCTGGATTGCTCGGAACGTTC 381
Query 360 CAGAATGAATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CAGAATGAATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACT 441
Query 420 GCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 GCAAGGCAAGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCT 501
Query 480 AGACTCAAAAAAGAAAGAGACGAAGCACGCCAATTACTTGCAGAGGT-GAAAAGACATAT 538
||||| |||||||||||||||||||||||||||||||| || ||||| || | |||||||
Sbjct 502 AGACTTAAAAAAGAAAGAGACGAAGCACGCCAATTACTGGCCGAGGTTGAGA-GACATAT 560
Query 539 ACCTGCGGCCCCAGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGC 598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACCTGCGGCCCCTGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGC 620
Query 599 CGGTGATGAAGAACTGGGTCCTAATGCAAAGAAATTATGTCCTGGAATTTCTGCTGAAAT 658
|| ||| || |||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct 621 CGTTGACGAGGAACTGGGTCCTGATGCAAAGAAATTGTGTCCTGGAATTTCAGCTGAAAT 680
Query 659 TATTACGGAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGTAAAAAGCGACAGAT 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 681 TATTACGGAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGAAAAAAGCGACAGAT 740
Query 719 TTCTCAAACATTGGCTTCAATAGATGCTTTGGAGAGGTTCACTCAGCTATCAAGCCACCC 778
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 741 TCCTCAAACATTGGCGTCAATAGATACTTTGGAGAGGTTCACTCAGCTATCAAGCCACCC 800
Query 779 ACTTCACAAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 ACTTCACAAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGT 860
Query 839 CATTGCTACTGGAGGAGTTGATGCGACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAAT 898
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 861 CATTGCTACTGGAGGAGTTGATGCAACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAAT 920
Query 899 CTTGTCAACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACGC 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 921 CTTGTCAACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACTC 980
Query 959 TGATCTTGTTTTGACTGCTTCTGCTGACAAGACAGTCCGTATCTGGCGGAATCCTGGGGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGATCTTGTTTTGACTGCTTCTGCTGACAAGACAGTCCGTATCTGGCGGAATCCTGGGGA 1040
Query 1019 TGGGAACTATGCTTGTGGGCATACATTGAATGATCACTCTGCAGAGGTGCGAGCCGTAAC 1078
|||||| |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1041 TGGGAATTATGCTTGTGGGTATACATTGAATGATCATTCTGCGGAGGTGCGAGCTGTAAC 1100
Query 1079 TGTGCATCCCACAAATAAATACTTTGTGTCGGCATCTCTTGATAGTACATGGTGCTTCTA 1138
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1101 TGTGCATCCCACAAATAAATACTTTGTCTCGGCATCTCTTGATGGTACATGGTGCTTCTA 1160
Query 1139 TGATCTGTCCTCTGGCTCATGCCTTGCACAGGTATCAGATGGAT-CAGAGAATGCAGATT 1197
|||||||||||||||||||||||||||||||||||||||| || || |||||| |||||
Sbjct 1161 CGATCTGTCCTCTGGCTCATGCCTTGCACAGGTATCAGATG-ATTCAAAGAATGTAGATT 1219
Query 1198 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1279
Query 1258 TTGTTAAGATTTGGGATGTTAAAAGTCAGGCAAATGTGGCAAAGTTTGATGGACACACTG 1317
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1280 TTGTTAAGATTTGGGACGTTAAAAGTCAGGCAAATGTGGCTAAGTTTGATGGACACACTG 1339
Query 1318 GCGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACGGCTGCCGAGG 1377
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1340 GGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACAGCTGCAGAGG 1399
Query 1378 ATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAACTTCAAGTCATTTTTATCTGCAG 1437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1400 ATGGTGTTAGGTTGTGGGATCTGCGCAAGTTAAGGAACTTCAAATCATTTTTATCTGCAG 1459
Query 1438 ATGCGAACTCTGTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 ATGCGAACTCTGTGGAGTTTGATCCTAGCGGATCTTATCTCGGTATTGCTGCATCAGATA 1519
Query 1498 TCAGAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAG 1557
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1520 TCAAAGTATACCAGACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACACTCCCAG 1579
Query 1558 ATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1592
|||||||||||||||||||||||||||||||||||
Sbjct 1580 ATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1614
Score = 425 bits (230), Expect = 6e-118
Identities = 323/365 (88%), Gaps = 17/365 (5%)
Strand=Plus/Plus
Query 1592 GACCATAACCTACGGATATTTGGTCTTCCTGGTGACGAAAAAGCCAACGCCGATGATGAC 1651
|||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1654 GACCGTAACCTACGGATATTTGGTCTTCCTGGTGATGAAAAAGCCAACGTCGATGATGAC 1713
Query 1652 TCTGCACAAGACTCGTGAAGAATCCGTAAAAAGACTCAGACAGCAA-ATTCCAAATGTTC 1710
||||| ||||||||||||| |||||||||||| |||||||||| || ||||||||||| |
Sbjct 1714 TCTGCGCAAGACTCGTGAACAATCCGTAAAAA-ACTCAGACAG-AACATTCCAAATGTCC 1771
Query 1711 ATCTCCGGCTAT-ATCTTGCTCCAATTTCTCAACTTTTGTTGTATCTTCCAGTATTTGCA 1769
|||||| | | | |||| |||| |||||||||| || ||||||||||| |||||||||||
Sbjct 1772 ATCTCCAG-TGTTATCTCGCTCAAATTTCTCAAGTTCTGTTGTATCTTACAGTATTTGCA 1830
Query 1770 GCAA-GGGGGAGAATTTCTTAGGTGCGGGTCATGAGTGAGT--T-ATTGTGATCATCCTC 1825
|||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 1831 GCAATGGGGGAGAATTTCATAGGTGCGGGTCATGAGTGAGTGGTGATTGTGATCATCCTC 1890
Query 1826 GCTTCCTCC-G-ACATTCAAACGATCACACTCACACACACTCGAGTTTTCTTATAGGCTC 1883
||| |||| | | |||||||| || ||||||||| || |||||||||||||||||||||
Sbjct 1891 GCTACCTCTTGGA-ATTCAAACAATGACACTCACAAACCCTCGAGTTTTCTTATAGGCTC 1949
Query 1884 TTCTAATCTCTCTTTGTACCTTCAAAATCTGTACCAAAC--T-TGTTCTTTCTGTTGCCA 1940
|| ||||| || || |||||||||| || ||||||||| | |||||||||||||||||
Sbjct 1950 TTTTAATCGCT-TT-GTACCTTCAATATATGTACCAAAAAATGTGTTCTTTCTGTTGCCA 2007
Query 1941 AATGA 1945
|||||
Sbjct 2008 AATGA 2012
> AT1G04510.1 | Symbols: MAC3A | MOS4-associated complex 3A |
chr1:1226575-1230827 FORWARD LENGTH=1981
Length=1981
Score = 1450 bits (785), Expect = 0.0
Identities = 1257/1483 (85%), Gaps = 39/1483 (3%)
Strand=Plus/Plus
Query 131 GATGAACTGTGCAATTTCCGGAGAAGTTCCCAAGGAGCCAGTGGTTTCGACCAAGTCAGG 190
|||||| |||||||||||||| |||||||| ||||||| |||||||| | ||||| ||
Sbjct 174 GATGAATTGTGCAATTTCCGGCGAAGTTCCGGAGGAGCCTGTGGTTTCTAAGAAGTCGGG 233
Query 191 TTTGCTCTT-CGAG-AGACGATTAATCGAAAGGCATATATCGGATTATGGGAAGTGCCCT 248
|||||| || |||| || || ||||| | | ||||||||| ||||||||||| |||||
Sbjct 234 TTTGCT-TTACGAGAAG-CGGCTAATCCAGACGCATATATCCGATTATGGGAAATGCCCG 291
Query 249 GTTACTGGCGAACCACTTAC-CATTGATGACATTGTTCCCATCAAAACTGGGGAGATCAT 307
|||||||| || |||| ||| | ||||||||||||||||||||||||||||| ||||| |
Sbjct 292 GTTACTGGTGAGCCACATACTC-TTGATGACATTGTTCCCATCAAAACTGGGAAGATCGT 350
Query 308 AAAGCCGAAAACATTGCATACAGCTAGCATCCCTGGATTGCTCGGAACGTTCCAGAATGA 367
|||||||||| |||| || ||||||||||||||||||||||| |||||||| |||| |||
Sbjct 351 AAAGCCGAAACCATTACACACAGCTAGCATCCCTGGATTGCTTGGAACGTTTCAGACTGA 410
Query 368 ATGGGACGGTTTGATGCTATCAAATTTTGCACTGGAGCAACAACTACATACTGCAAGGCA 427
||||||| |||||||||||||||||||||| |||| |||||||| |||||||| |||||
Sbjct 411 ATGGGACAGTTTGATGCTATCAAATTTTGCTTTGGAACAACAACTGCATACTGCGAGGCA 470
Query 428 AGAGCTAAGTCATGCCTTGTATCAGCATGATTCTGCTTGTCGTGTGATTGCTAGACTCAA 487
|||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 471 AGAGCTAAGTCACGCTTTGTATCAGCATGATGCTGCTTGTCGTGTGATTGCTAGGCTTAA 530
Query 488 AAAAGAAAGAGACGAAGCACGCCAATTACTTGCAGAGG-TGAAAAGACA-TATACCTGCG 545
|||||||||||||||| |||| ||||| |||||||||| ||||| | || | | |||||
Sbjct 531 AAAAGAAAGAGACGAATCACGACAATTGCTTGCAGAGGCTGAAAGG-CAGT-TGCCTGCA 588
Query 546 GCCCCAGAAGCTGTGACAGCTAATGCTGCTCTGAGTAATGGTAAACGAGCTGCCGGTGAT 605
||||| |||| || ||| | ||||||||||| |||||||||||||||| | || ||||
Sbjct 589 GCCCCCGAAGTTGCCACATCGAATGCTGCTCTTAGTAATGGTAAACGAGGTATCGATGAT 648
Query 606 GAAGAACTGGGTCCTAATGCAAAGAAATTATGTCCTGGAATTTCTGCTGAAATTATTACG 665
| || | ||| ||||||||||||||| | ||| ||||||||| |||||| |||| ||
Sbjct 649 GGTGAGCAGGGGCCTAATGCAAAGAAAATGCGTCTTGGAATTTCGGCTGAAGTTATCACA 708
Query 666 GAATTGACTGATTGTAATGCTGCTCTTTCCCAGAAGCGTAAAAAGCGACAGATTTCTCAA 725
||| | || |||||||||||||||||||| ||| ||||||||||| ||||||| || ||
Sbjct 709 GAACTCACAGATTGTAATGCTGCTCTTTCTCAGCAGCGTAAAAAGAGACAGATCCCTAAA 768
Query 726 ACATTGGCTTCAATAGATGCTTTGGAGAGGTTCACTCAGCTATCAAGCCACCCACTTCAC 785
|||||||||||| | |||||| |||||| |||||| || || ||||||||||| ||||||
Sbjct 769 ACATTGGCTTCAGTCGATGCTCTGGAGAAGTTCACCCAACTCTCAAGCCACCCCCTTCAC 828
Query 786 AAGACCAACAAACCAGGCATTTGTTCGATGGACATTCTACATTCTAAGGATGTCATTGCT 845
|||||||||||||| || |||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 829 AAGACCAACAAACCTGGAATTTTTTCAATGGACATCCTACATTCTAAGGATGTCATCGCT 888
Query 846 ACTGGAGGAGTTGATGCGACTGCTGTTCTCTTTGATCGCCCTTCTGGACAAATCTTGTCA 905
|| |||||| ||||| | ||||| |||||||||||||| ||||| ||||||||||| |||
Sbjct 889 ACGGGAGGAATTGATACAACTGCCGTTCTCTTTGATCGTCCTTCAGGACAAATCTTATCA 948
Query 906 ACACTGACTGGTCACTCGAAGAAGGTTACAAGCGTAAAATTTGTAGGCGACGCTGATCTT 965
|| |||||||||||||| ||||||||||||||| | || || || || ||| ||||||||
Sbjct 949 ACGCTGACTGGTCACTCAAAGAAGGTTACAAGCATCAAGTTCGTTGGTGACACTGATCTT 1008
Query 966 GTTTTGACTGCTTC-TGCTGACAAGACAGTCCGTATCTGGCGGAA-T-CCTGGGGATGGG 1022
|| || |||||||| | | |||||||||||||| |||||| ||| | || | |||||||
Sbjct 1009 GTGTTAACTGCTTCATCC-GACAAGACAGTCCGCATCTGG-GGATGTTCC-GAGGATGGG 1065
Query 1023 AACTATGCTTGTGGGCATACATTGAATGATCACTCTGCAGAGGTGCGAGCCGTAACTGTG 1082
|||||| | | | | |||||| |||| ||||| ||||| ||||||||||| ||||||||
Sbjct 1066 AACTATACCTCTAGACATACACTGAAAGATCATTCTGCCGAGGTGCGAGCTGTAACTGTC 1125
Query 1083 CATCCCA-CAAATAAATACTTTGTGTCGGCATCTCTTGATAGTACATGGTGCTTCTATGA 1141
|| | || | ||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 1126 CA-CGCAACGAATAAATACTTTGTGTCAGCATCACTTGACAGTACATGGTGCTTCTATGA 1184
Query 1142 TCTGTCCTCTGGCTCATGCCTTGCACAGGT-ATCAGATGGATCAGAGAATG-CA-GA-TT 1197
||||||||| || | ||||||||| ||||| | |||||| || || || | | || ||
Sbjct 1185 TCTGTCCTCCGGTTTATGCCTTGCTCAGGTGA-CAGATGCTTCCGAAAACGACGTGAATT 1243
Query 1198 ACACGGCTGCTGCTTTTCATCCCGATGGTCTCATTCTCGGAACCGGTACTTCTCAATCTG 1257
|||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 1244 ACACGGCTGCTGCTTTTCATCCTGATGGTCTCATTCTTGGAACTGGTACCGCTCAATCTA 1303
Query 1258 TTGTTAAGATTTGGGATGTTAAAAGTCAGGCAAATGTGGCAAAGTTTGATGGACACACTG 1317
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1304 TTGTTAAGATTTGGGATGTAAAAAGTCAGGCAAATGTGGCAAAGTTTGGTGGACACAATG 1363
Query 1318 GCGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGACGGCTGC-CGAG 1376
| ||| | || ||||||| ||||||||||| ||||| ||||| ||||| ||||| | |
Sbjct 1364 GAGAAATCACCTCTATATCATTCTCTGAAAACGGTTATTTCCTTGCGACTGCTGCACT-G 1422
Query 1377 GATGGTGTTAGGTTGTGGGATCT-GCGCAAGTTAAGGAACTTC--AAGTCATTTTTA-TC 1432
|||||||||||||||||||| || ||||||||||| ||||||| || | ||| | |
Sbjct 1423 GATGGTGTTAGGTTGTGGGA-CTTGCGCAAGTTAAAGAACTTCCGAAC-C-TTTG-ACTT 1478
Query 1433 TGCAGATGCGAACTCTGTGGAGTTTGATCC-TAGCGGATCTTATCTCGGTATTGCTGCAT 1491
| ||||||| ||||| ||||||||||| || ||||||||||||||| || |||||||| |
Sbjct 1479 TCCAGATGCAAACTCGGTGGAGTTTGA-CCATAGCGGATCTTATCTTGGCATTGCTGCTT 1537
Query 1492 CAGATATCAGAGTATACCA-GACGGCAAGTGTGAAAGCTGAATGGAACCTTATCAAGACA 1550
||||||| ||||||| ||| | | || ||||| ||||| |||||||||| ||||||||
Sbjct 1538 CAGATATAAGAGTATTCCAAG-CAGCTAGTGTAAAAGCAGAATGGAACCCAATCAAGACT 1596
Query 1551 CT-CCCAGATCTCTCCGGCACTGGTAAAGCTACGTGTGTGAAG 1592
|| ||| ||||| ||||| || |||||||| || |||| |||
Sbjct 1597 CTTCCC-GATCTGTCCGGTACAGGTAAAGCAACAAGTGTTAAG 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5