BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482277
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33350.1 | Symbols: | CCT motif family protein | chr2:14133... 2185 0.0
AT1G04500.1 | Symbols: | CCT motif family protein | chr1:12214... 470 2e-131
> AT2G33350.1 | Symbols: | CCT motif family protein | chr2:14133929-14137154
FORWARD LENGTH=1738
Length=1738
Score = 2185 bits (1183), Expect = 0.0
Identities = 1434/1549 (93%), Gaps = 41/1549 (3%)
Strand=Plus/Plus
Query 1 TATTTGAATTTCTTCGATGGATTTTCTTG-T--TCATACATCACCCATTCCAATATTATT 57
||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 3 TATTTGAATTTCTTCCATGGATTTTCTTGTTCATCATACATCACTCATTCCAATATTATT 62
Query 58 CCATAAAGCATCCGTGAAGCCTCGTCCATTAATTTTCTTGCTATAATTCA-ACTTTTCTG 116
||| ||| ||||| ||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 63 CCACAAATCATCCTTGAAGCCTCGTTCATTAATTTTCTTGCTATAATTCATA-TTTTCTC 121
Query 117 GGGAATTTTCTTTATTTTTCCCAGAAAAAATTCGCATTTACATTGGAGATATACAAAGAA 176
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 122 GGGAATTTTCTTTA-TTTTCCCAGAAAGTTTTCGCATTAACATTGGAGATATACAAAG-A 179
Query 177 AC-CAAACATGTTGCAAGACGTGATCTCGTCTCACGATCAGCCTTCCATC-GT-AATTGA 233
|| ||||||||||||||||| |||||||||||||| ||| | | || | | || ||
Sbjct 180 ACACAAACATGTTGCAAGACATGATCTCGTCTCACTCTCA-CGAT-CAGCTTTCCATCGA 237
Query 234 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGATATCACGAGCCCTCTTAGTGCTCAGATCTTCGATTTCTGCGATCCACAACTCTTTCA 297
Query 294 AGAAACCTTTAATCAAACCACTGAAGTCACCTCTACTTCAAACATTCTCGAGAAATCCGG 353
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 298 AGAAACCTTTAATCAATCCTCTGAAGTCACCTCTACTTCAAACATTCTTGAGAAATCCGG 357
Query 354 AAGCTTCCATTCcaacact---accacaacaacaac----aac--tgacaacagtaacaa 404
||||||||||||||||||| ||||| |||||||| ||| | |||||| |||||
Sbjct 358 AAGCTTCCATTCCAACACTAACACCACCACAACAACTGAGAACAGTAACAACAACAACAA 417
Query 405 caacaagaacacaaaacttcaagacgatgaagatgacaacaacaacaCGGATCTATCCAT 464
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 CAACAAGAACACAAACCTTCAAGACGATGAAGATGACAACAACAACACGGATCTGTCCAT 477
Query 465 AATCTTTGATTCACAAGAAGATTTCGAAAACGACATAACGGCCTCAATTGATTTCTCATC 524
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 478 AATCTTTGATTCACAAGAAGATTTCGAAAACGATATAACGGCTTCAATCGATTTCTCATC 537
Query 525 ATCTTCACTCCAATATCCAGTCATCGATCATCTCCTCACGGCAACAAGCCAAGACCAGTT 584
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 ATCTTCACTGCAATATCCAGTCATCGATCATCTCCTCACGGCAATAAGCCAAGACCAGTT 597
Query 585 TGATTTCTCATCAGGACTCCAACTTATTCATCAGCCTGCTAACATTTCACACTCTGGAGA 644
||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 598 TGATTTCTCATCAGGTCTCCAAGTTATTCATCAGCCTCCTAACATTTCATACTCTGGAGA 657
Query 645 CCCTCTGTCTCTATCGGCGGTTTCCTCTCTAGCTCCTCCTCCTTTACAATCAGGGGTTTT 704
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 658 TCCTCTGTCTCTATCGGCGATTTCCTCTCTAGCTCCTCCTCCCTTACAATCAGGGGTTTT 717
Query 705 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGCTTGAACCCTTCTTGCTC 764
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 CGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGGTTTGAACCCTTCTTGCTC 777
Query 765 CTTCTTCCGTACGTCCGGTTTACCGACGTATATGAGCACCGGTTTATTATCTGCTGAAAG 824
||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 778 TTTCTTCCGTTCGTCCGGTTTACCGGCGTATATGAGTACCGGTTTATTATCTGCTGAAAG 837
Query 825 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATAA 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 838 TAATCTCGGTTATCTTCCCGGGAATATTCATGTGGGATCAGAAATCAATAAGCCACATGA 897
Query 885 TCCATTGATGGACTTTCAAGCTGATAATGGTGGTTTGTTTTGTCCGGGTTCCATGAAACG 944
|||| ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||
Sbjct 898 TCCACTGATGGACTTTCAAGCTGATAATGGTGGTTTTTTTTGTCCGGATTCCATCAAACG 957
Query 945 TATCTTTAATCCAGAAGATCTCCAGAAGGCAC-T--TGGTGGCGTCGAGAACCAGAGCAA 1001
||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| |
Sbjct 958 TATGTTTAATCCAGAAGATCTCCAGAAGGCACTTGGTGGTGGCGCCGAGAACCAGAGCCA 1017
Query 1002 CTTGGTGGCACCTCAGGCTCATCCAGCATTAGGAACGGTCGAGATAAACGGTTTAGAAGA 1061
||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1018 CTTGGTGACACCTCAAGCTCATCCAGCATTAGGACCGGTCGATATAAACGGTTTAGAAGA 1077
Query 1062 TTCAACGATGAACAAAGTTGGAAAACTATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1121
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 CTCAACGTTGAACAAAGTTGGAAAACTCTCCCCTGAGCAAAGGAAAGAGAAGATTCGTAG 1137
Query 1122 GTACATGAAGAAGAGGAACGAAAGAAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1138 GTACATGAAGAAGAGGAACGAAAGGAATTTCAACAAGAAAATCAAGTATGCGTGTAGGAA 1197
Query 1182 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGG 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 AACATTGGCAGATAGTCGACCAAGAGTTAGAGGAAGATTTGCAAAGAATGATGAATTTGG 1257
Query 1242 TGAACCAAATAGACAGGCTTTTTCAAGCCATCACGATGATGAAGATGAAGAAGATATGGG 1301
||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1258 TGAGCCAAATAGACAAGCTTTTTCAAGCCATCATGATGATGAAGATGAAGACGATATGGG 1317
Query 1302 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AGTGAAGGATGAGGAACAATTGGTAGATTCTTCAGACATTTTTGCACACATTAGTGGAGC 1377
Query 1362 CAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAATTGTCA-CAC 1420
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 1378 AAATTCCTTCAAGTGCAACTACCCAATCCAATCTTGGATTTGAGTTCCAAGTG-CAACAC 1436
Query 1421 CACATA-AC---ATG----AA--T----CTTATAATAGTTATACCAATAGTATTTCTATA 1466
|||||| || ||| || | ||||||||||||| || ||||||||| |||||
Sbjct 1437 CACATATACCTCATGTTTTAACATGAATCTTATAATAGTTACACAAATAGTATTGCTATA 1496
Query 1467 GAGTTATAACTTGTTTACTTAGTTTTGTCATGCCCC-AACAAGTTCTGT 1514
||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1497 GAGTTATGACTTGTATACTTAGTTTTGTCATGCCCCCAACAAGTTCTGT 1545
> AT1G04500.1 | Symbols: | CCT motif family protein | chr1:1221433-1224366
REVERSE LENGTH=1616
Length=1616
Score = 470 bits (254), Expect = 2e-131
Identities = 588/742 (79%), Gaps = 51/742 (7%)
Strand=Plus/Plus
Query 699 GGTTTTCGAAGAAGATTGTCTTTCTTCAGTCCCAAGTTACAATCTTGG---CTTGAACCC 755
||||||||||||||||||||||||||| || ||||||||||||||||| | | |||||
Sbjct 572 GGTTTTCGAAGAAGATTGTCTTTCTTCTGTGCCAAGTTACAATCTTGGTTCCATAAACCC 631
Query 756 TTCTTGCTCCTTCTT-C-C--------GTACGT-CCGGTTTACCGACGTATATGA--G-C 801
||||| ||||||||| | | ||| | ||||||||||||| || |||| |
Sbjct 632 TTCTT-CTCCTTCTTGCTCTTTTTTGGGTA-ATACCGGTTTACCGACTTACATGACCGTA 689
Query 802 ACC-GG--T-TTATTATCTGCTG-AAAGTAATCTCGGTTATCTT-C-CCGGGAATATTCA 854
||| || | | || | | | | || |||| |||| | || | |||||||||| ||
Sbjct 690 ACCGGGAATATGATGAACACCGGTTTAG-GATCT-GGTT-T-TTACTCCGGGAATATCCA 745
Query 855 TGTGGGATCAGAAATCAATAAGC--CACATAATCCATTGATGGACTTTCAAGCTGATAAT 912
| | || || || || | || | ||||| ||| ||||||||| ||||||||||||||
Sbjct 746 TCTCGGTTCTGATTTC-A-AACCATCACATGATCAATTGATGGAAATTCAAGCTGATAAT 803
Query 913 GGTGGTTTGTTTTGTCCGGGTTCC-ATGAAACGTATCTTTAATCCAGAAGATC-TC--CA 968
||||| ||||| ||||| | ||| || |||| ||||||||||||| ||||| || |
Sbjct 804 GGTGGATTGTTCTGTCC-AGATCCGATTAAACCCATCTTTAATCCAGGAGATCATCATCT 862
Query 969 GAAGGCACTTGGTGGCGTCGAGAACCAGAGCAACTTGGTGGCACCTCAGGCTCATCCAGC 1028
||| ||||| || ||||||||||||| | || ||||||||| | || || ||| ||
Sbjct 863 CCAGGGACTTGACGGTGTCGAGAACCAGAACCACATGGTGGCACAGCCGGTTC-TCCCGC 921
Query 1029 A-TTAGGAACGGTCGAGATAAACGGTTTAGAAGATTCAACG-ATGAACAAAGTTGGAAAA 1086
| ||||| || | ||||||| ||||||||| || | | | | |||||||| ||||||
Sbjct 922 AGTTAGGGAC-G--GAGATAACCGGTTTAGACGACCCGA-GTTTCAACAAAGTCGGAAAA 977
Query 1087 CTATCCCCTGAGCAAAGGAAAGAGAAGATTCGTAGGTACATGAAGAAGAGGAACGAAAGA 1146
|| || | ||||| || ||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 978 CTCTCGGCAGAGCAGAGAAAAGAGAAGATTCATAGGTATATGAAGAAGAGGAACGAGAGG 1037
Query 1147 AATTTCAACAAGAAAATCAAGTATGCGTGTAGGAAAACATTGGCAGATAGTCGACCAAGA 1206
||||||| |||||||||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 1038 AATTTCAGCAAGAAAATCAAGTATGCATGTAGGAAGACGTTGGCAGATAGTCGTCCAAGA 1097
Query 1207 GTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGAACCAAATAGACAGGCTTTTTCA 1266
||||||||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct 1098 GTTAGAGGAAGATTTGCAAAGAATGATGAATTTGGTGAACCAAATAGACAAGCCTGTTCA 1157
Query 1267 AGCCATCACGATGATGAAGATGAAGAAGATATGGGAGTGAAGGATGAGGAACAATTGGTA 1326
|||||||| || ||||| ||||| || | | ||| || ||||| || ||||| || ||
Sbjct 1158 AGCCATCATGAAGATGATGATGATGATG-TG-GGG-GTAAAGGAAGAAGAACAGTTAGTT 1214
Query 1327 GATTCTTCAGACAT-TTTTGCACACATTAGTGGAGCCAATTCCTTCAAGTGCAACTACCC 1385
|||||||| ||||| |||| ||||||| ||||| | || || ||||| ||||| || ||
Sbjct 1215 GATTCTTCGGACATATTTT-CACACATAAGTGGTGTGAACTCTTTCAAATGCAATTATCC 1273
Query 1386 AATCCAATCTTGGATTTGAGTT 1407
|||||| |||||||||||||||
Sbjct 1274 AATCCAGTCTTGGATTTGAGTT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5