BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482278
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33370.1 | Symbols: | Ribosomal protein L14p/L23e family pr... 941 0.0
AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e fa... 453 9e-127
> AT2G33370.1 | Symbols: | Ribosomal protein L14p/L23e family
protein | chr2:14143554-14144721 REVERSE LENGTH=664
Length=664
Score = 941 bits (509), Expect = 0.0
Identities = 615/662 (93%), Gaps = 24/662 (4%)
Strand=Plus/Plus
Query 1 AATCCCTTCTTCTCCGTCATTTTTCTTCTTCGATCAGACGCCATAACACATCAGAAGCCC 60
||||| ||||||||| |||||||||| ||||||||||||||| || |||||||||||||
Sbjct 1 AATCCTTTCTTCTCCTTCATTTTTCTACTTCGATCAGACGCC--AA-ACATCAGAAGCCC 57
Query 61 TAGAGCTTGAGCCGTCGGAAATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAAT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TAGAGCTTGAGCCGTCGAAAATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAAT 117
Query 121 TCAGGATGTCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACAGGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 118 TCAGGATGTCACTTGGTCTGCCCGTTGCAGCCACAGTGAACTGTGCAGACAACACTGGTG 177
Query 181 CTAAGAACCTTTACATCATTTCGGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTT 240
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 178 CTAAGAACCTTTACATCATCTCTGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTT 237
Query 241 CTGCTTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAAGGTAAGCCAGACCTCAGGA 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 CTGCTTGTGTTGGTGACATGGTTATGGCCACTGTCAAGAAAGGTAAACCAGACCTCAGGA 297
Query 301 AAAAGGTTCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAAGGTTCTTCCTGCTGTGATTGTTAGGCAACGTAAGCCATGGCGCCGAAAGGACGGTG 357
Query 361 TTTTCATGTACTTTGAAGATAATGCGGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAG 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 358 TTTTCATGTACTTTGAAGATAATGCTGGAGTGATTGTGAACCCTAAGGGAGAAATGAAAG 417
Query 421 GTTCTGCGATTACTGGACCCATTGGGAAAGAGTGTGCAGATCTCTGGCCAAGGATTGCTA 480
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 418 GTTCTGCAATTACTGGACCTATTGGGAAAGAGTGTGCGGATCTCTGGCCAAGGATTGCTA 477
Query 481 GTGCTGCTAATGCCATTGTCTAAGTCAAGATCATCTATCACTTTTGCTGGTTATGTATCT 540
|||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 478 GTGCTGCTAACGCCATTGTCT--G--AAGATCATTTATCACTTTTGCTGGTTATGTATCT 533
Query 541 GT-------GATACTCGAAATAGTTGATGTTTTGGGTGTTTTAAGTAGAGAGACCACAAC 593
|| || || ||||||||||| ||||||| |||||||||||||||| | ||||
Sbjct 534 GTCTTCAACGAAACGCGAAATAGTTGGTGTTTTGAGTGTTTTAAGTAGAGA--CGACAAT 591
Query 594 CCTTTTGTGAGCTTCAGACAAATTTCAGTCTGGTGTTTCTAAGAGATTTTGTTTAG-TTT 652
| |||||||||||||||||| ||||| | | | || ||||||||||||| |||| |||
Sbjct 592 C-TTTTGTGAGCTTCAGACATATTTC---CAG-T-TT-CTAAGAGATTTTGCTTAGATTT 644
Query 653 TT 654
||
Sbjct 645 TT 646
> AT3G04400.1 | Symbols: emb2171 | Ribosomal protein L14p/L23e
family protein | chr3:1167276-1168659 FORWARD LENGTH=837
Length=837
Score = 453 bits (245), Expect = 9e-127
Identities = 372/433 (86%), Gaps = 9/433 (2%)
Strand=Plus/Plus
Query 81 ATGTCGAAGCGAGGACGTGGAGGAACGTCTGGTAACAAATTCAGGATGTCACTTGGTCTG 140
||||||||||||||| | |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 64 ATGTCGAAGCGAGGAAGAGGAGGAACCTCTGGTAACAAGTTCAGGATGTCACTGGGTCTT 123
Query 141 CCCGTTGCAGCCACAGTGAACTGTGCAGACAACACAGGTGCTAAGAACCTTTACATCATT 200
|| || |||||||| ||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 124 CCAGTGGCAGCCACTGTGAACTGTGCTGACAACACCGGAGCTAAGAACCTTTACATCATT 183
Query 201 TCGGTTAAAGGAATCAAAGGTCGTCTCAATCGGTTACCTTCTGCTTGTGTTGGTGACATG 260
||||||||||||||||| |||||||| || || || || || || ||||||||||| |||
Sbjct 184 TCGGTTAAAGGAATCAAGGGTCGTCTTAACCGTTTGCCATCAGCGTGTGTTGGTGATATG 243
Query 261 GTTATGGCCACTGTCAAGAAAGGTAAGCCAGACCTCAGGAAAAAGGTTCTTCCTGCTGTG 320
|||||||| ||||| |||||||||||||| || ||| | || ||||| |||||||||||
Sbjct 244 GTTATGGCTACTGTTAAGAAAGGTAAGCCTGATCTCCGTAAGAAGGTGCTTCCTGCTGTC 303
Query 321 ATTGTTAGGCA-ACGTAAGCCATGGCGCCGAAAGGACGGTGTTTTCATGTACTTT-GAAG 378
||||||||||| | | ||||| |||||||||||||||||||| |||||||| ||| ||||
Sbjct 304 ATTGTTAGGCAGAGG-AAGCCTTGGCGCCGAAAGGACGGTGTCTTCATGTA-TTTCGAAG 361
Query 379 ATAATGCGGGAGTGATTGTGAA-CCCTAAGGGAGAAATGAAAGGTTCTGCGATTACTGGA 437
||||||| || || ||||| || ||| ||||| ||||||||||| ||||| || ||||||
Sbjct 362 ATAATGCTGGTGTCATTGTCAATCCC-AAGGGTGAAATGAAAGGATCTGCTATCACTGGA 420
Query 438 CCCATTGGGAAAG-AGTGTGCAGATCTCTGGCCAAGGATTGCTAGTGCTGCTAATGCCAT 496
|| || || |||| ||||||| ||||| |||||||| || || |||||||| || |||||
Sbjct 421 CCAATCGG-AAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCAT 479
Query 497 TGTCTAAGTCAAG 509
|| |||| ||||
Sbjct 480 CGTTTAAG-CAAG 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5