BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482279
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33380.1 | Symbols: RD20, CLO-3 | Caleosin-related family pr... 1171 0.0
> AT2G33380.1 | Symbols: RD20, CLO-3 | Caleosin-related family
protein | chr2:14144831-14146471 REVERSE LENGTH=961
Length=961
Score = 1171 bits (634), Expect = 0.0
Identities = 718/757 (95%), Gaps = 11/757 (1%)
Strand=Plus/Plus
Query 64 AGAGAGTATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCGCCGTTAGCTCCGGTCAC 123
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 91 AGAGAGAATGGCAGGAGAGGCAGAGGCTTTGGCCACGACGGCACCGTTAGCTCCGGTCAC 150
Query 124 CAGTCAGCGAAAAGTACGGAATGATTTGGAGGAAACGTTACCAAAACCATATATGGCAAG 183
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 151 CAGTCAGCGAAAAGTACGGAACGATTTGGAGGAAACATTACCAAAACCATACATGGCAAG 210
Query 184 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGACAGCAGAGG 243
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 211 AGCATTAGCAGCTCCAGATACAGAGCATCCGAATGGAACAGAAGGTCACGATAGCAAAGG 270
Query 244 AATGAGTGTTATGCAACAACATGTCGCTTTCTTCGACCAAAACGACGACGGAATCGTCTA 303
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 271 AATGAGTGTTATGCAACAACATGTTGCTTTCTTCGACCAAAACGACGATGGAATCGTCTA 330
Query 304 TCCGTGGGAGACTTATAAGGGATTTCGTGACCTCGGTTTCAACCCAATTTCCTCTATCTT 363
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 331 TCCTTGGGAGACTTATAAGGGATTTCGTGACCTTGGTTTCAACCCAATTTCCTCTATCTT 390
Query 364 TTGGACCTTACTCATAAACTTAGCGTTTAGCTACGTTACACTTCCGAGTTGGGTGCCATC 423
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 391 TTGGACCTTACTCATAAACTTAGCGTTCAGCTACGTTACACTTCCGAGTTGGGTGCCATC 450
Query 424 ACCATTATTGCCTGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 ACCATTATTGCCGGTTTATATCGACAACATACACAAAGCCAAGCATGGGAGTGATTCGAG 510
Query 484 CACCTATGACACCGAAGGAAGGTATGTCCCGGTTAACCTCGAGAACGTATTTAGCAAATA 543
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 511 CACCTATGACACCGAAGGAAGGTATGTCCCAGTTAACCTCGAGAACATATTTAGCAAATA 570
Query 544 CGCGCTAACGGTTAAGGATAAGCTATCTTTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 603
||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 571 CGCGCTAACGGTTAAAGATAAGTTATCATTTAAAGAGGTTTGGAATGTAACCGAGGGAAA 630
Query 604 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TCGAATGGCAATCGATCCTTTTGGATGGCTTTCAAACAAAGTTGAATGGATACTACTCTA 690
Query 664 TATTCTGGCAAAGGACGAGGAAGGTTTCATTTCTAAAGAAGCTGTGAGAGGTTGCTTTGA 723
|||||| || |||||||| || |||||| | |||||||||||||||||||||||||||||
Sbjct 691 TATTCTTGCTAAGGACGAAGATGGTTTCCTATCTAAAGAAGCTGTGAGAGGTTGCTTTGA 750
Query 724 TGGAAGCTTATTTGAACATATTGCTAAAAAGAACAAAGAGAGGGCCAATTCTCGCAAACA 783
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 751 TGGAAGTTTATTTGAACAAATTGC---------CAAAGAGAGGGCCAATTCTCGCAAACA 801
Query 784 AGACTAAGAAAAT-T-TGTTTGGTTAGCGAATAAAGC 818
|||||||||| | | |||||||||||||||||||||
Sbjct 802 AGACTAAGAATGTGTGTGTTTGGTTAGCGAATAAAGC 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5