BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482281
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B | chr... 843 0.0
> AT2G33385.2 | Symbols: arpc2b | actin-related protein C2B | chr2:14147503-14149799
REVERSE LENGTH=1256
Length=1256
Score = 843 bits (456), Expect = 0.0
Identities = 516/546 (95%), Gaps = 0/546 (0%)
Strand=Plus/Plus
Query 596 AGGAAATGGGAAAAGCCCCACAATGTAGTTGGTCACCAATTCCTCCTCTCCAACTTAGAG 655
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 638 AGGATATGGGAAAAGCCCCACAATGTAGTTGGTCGCCAATTCCTCCTCTCCAACTTAGAG 697
Query 656 GAGAACCGGTTCAAGACTTAACCACCAATTCTGGCTTTGTATCTTTTGATATTACTTCAC 715
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 698 GAGAACCGGTTCAAGACTTGACCACCAATTCTGGTTTTGTATCATTTGATATTACTTCAC 757
Query 716 GGCACGTTGAAGGAAAGAGACTAGACAAAACGGTTTGGAACTTACTAAATTTCTACGCAT 775
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 758 GGCACATTGAAGGAAAGAGACTGGACAAAACGGTTTGGAACTTGCTAAATTTCTACGCAT 817
Query 776 ACGTTAAATACCATATCAAGTGTTCGAGAGGGTACATACAGAGAAGGATGAGAAAAAGAA 835
|| ||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 818 GCGCTAAGTACCATATTAAGTGCTCGAGAGGGTACATACAGAGACGGATGAGAAAAAGAA 877
Query 836 TGGACAGTTTGGTTAAGCTGCTAAATAACACAAACCTAGAAGAAGAAGCTGCTCAAAATG 895
|||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 878 TGGAAACTTTAGTTAAGCTGCTAAATAACACAAGCCTAGAAGAAGAAGCTGCTCAAAATG 937
Query 896 AAAACGGAAGATGCAAATACGTAAAGGAGTTTGTGATGGTACCAAAAGGCAAATTGATGA 955
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 938 AAAACGGAAGATGCAAATACGTAAAGGAGTTTGTGAAGGTACCAAAAGGTAAATTGATGA 997
Query 956 TGAAACAAAGATGCAAGGAGATGACAAGGAGAGTGAAGATAAGTAAGTTCCGGATCAAAA 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 998 TGAAACAAAGATGCAAGGAGATGACAAGGAGAGTGAAGATAAGCAAGTTCCGGATCAAAA 1057
Query 1016 TTAACGGCTGTGCTCGGTTTCGATTTAATCAACGGTGGATATCTTTCCCCAAATTCTCTT 1075
| ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 1058 TCAACGGTTGTGCTCGGTTTCGATTCAATCAGCGGTGGATATCTCTCCCCAAATTCTCTT 1117
Query 1076 CGAAACCCTCAAATAAATCATACACAAAATTGGACTAAGTAACCTCTTAACTTGGAAAGT 1135
||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1118 CGAAACCATCAGATAAATCATACACAAAATTGGACTAAGTAATCACTTAACTTGGAAAGT 1177
Query 1136 CTCAAG 1141
||||||
Sbjct 1178 CTCAAG 1183
Score = 789 bits (427), Expect = 0.0
Identities = 547/602 (91%), Gaps = 19/602 (3%)
Strand=Plus/Plus
Query 1 ATGGCATATCTCGAAAGAGCATCTCCAGCGCTAAAAGAAACACTCCTCAAGATATACCGT 60
|||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||
Sbjct 31 ATGGCATATCTCGAAAGAGCCTCTCCAACGTTGAAAGAAACACTCCTCAAGATATACCGT 90
Query 61 GCTGAAAAACCTATTGAGGTCGATCAACATTTCCACGAGTTTGGTTCGATTCAATATCAC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 91 GCTGAAAAACCTATTGAGGTCGATCAACATTTCCATGAGTTTGGTTCGATTGAATACCAT 150
Query 121 ATCAAGTACTCGGTTTCGGATCCAAGTATTGTCCACGTATCGACGTCGACGTTGCTTGAG 180
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 151 ATCAAGTACTCGGTTTCGGATCCAAATATTGTGCATGTATCGACGTCGACGTTGCTTGAG 210
Query 181 ACACAAGGAGCGGTGACATTGAAGGAGATTTCAAGTCAGACTTATGAGGTGATTAAGAAT 240
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 211 ACACAAGGAGCAGTGACATTGAAGGAGATTTCAAGTTACACTTATGAGGTGATTAAGAAT 270
Query 241 ATTGCAGTTGGTGTGATTGATATTGTTGATCCACCAAGATTAGGGTTTCAATTGACCATT 300
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 271 ATTGGAGTTGGTGTGATTGACATCGTTGATCCACCAAGATTAGGGTTTCAATTGACCCTT 330
Query 301 GGTATTCACCTTGATAATATACCACGTGGAAAAGGAGCGATTAAAATCATTACAAAGATT 360
|| | |||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 331 GGCCTAAACCTTGATAATATACCACGTGGCAAAGAAGCGATTAAAATCATTACAAGGATT 390
Query 361 TCTGAAATACAAGCGATAATATTGAGTAACCAACTAAAAGAGATGCTGAGACA-TTTGAA 419
|||||| |||||||||||||||| |||| |||||||||||||||||||||| | ||| ||
Sbjct 391 TCTGAACTACAAGCGATAATATTAAGTAGCCAACTAAAAGAGATGCTGAGA-AGTTTAAA 449
Query 420 TTTTCAAGATGATTCACGACCGATCAATaacaacaacaacaacaacaGGCCCATCAAGAT 479
||||||||||||||||||| ||||||| ||||| | ||||||| |||
Sbjct 450 TTTTCAAGATGATTCACGATCGATCAA---CAACAT-----------G-CCCATCAGGAT 494
Query 480 TGTTTATCACCCAAGTGAACCTTTTTACGTCTTTAAACAGATG-AAGAAAATCACGGCCG 538
|||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 495 TGTTTATCACCCAAGTGAACCTTTCTACGTCTTTAAACAGCCGGAA-AAAATCACGGCCG 553
Query 539 TGTTTCCGATGAATTTTAAAGACAATTCGGATGTGGTCATTGCCACGTCATTCTTCCAGG 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 554 TGTTTCCGATGAATTTTAAAGACAATTCGGATGTGGTCATCGCCACGTCATTCTTCCAGG 613
Query 599 AA 600
||
Sbjct 614 AA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5