BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482282
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33390.1 | Symbols: | unknown protein; Has 34 Blast hits to... 691 0.0
AT2G33400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 63.9 1e-09
> AT2G33390.1 | Symbols: | unknown protein; Has 34 Blast hits
to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:14151135-14153118 FORWARD
LENGTH=1140
Length=1140
Score = 691 bits (374), Expect = 0.0
Identities = 447/480 (93%), Gaps = 14/480 (3%)
Strand=Plus/Plus
Query 1 TTAGGGTTTATGAATGATCAGGTGGGT-TTTGGTATTTGACATGAATTAGGGAACAAAAA 59
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |
Sbjct 299 TTAGGGTTTATGAATGATCAGGT-GGTATTTGGTATTTGACATGAATTAGGGAAC-ACGA 356
Query 60 GAT-CTCTCTCTATCTTCTCCAGATTGTTTAGAGCTTTGGGTCTACTTTCCATAGATTGA 118
| | | |||||||||||||||||||||||| ||||| |||| || |||||||||||||
Sbjct 357 G-TGATATCTCTATCTTCTCCAGATTGTTTA-AGCTTGGGGTTTAGTTTCCATAGATTG- 413
Query 119 TTTTTATAAGATTTGCTATGGATACGGCTCGTGGAGAGGGTAAAGAAGCTAATGGATGTG 178
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 414 -------AAGATTTGCTATGGATACGGGTCGTGGAGAGGGTAAAGAAGCTAATGGATGTG 466
Query 179 AGAATAAGGCTATAGTTAGTCTAAATAGCAGTGAAATTGAAGATCAAATCTCTGAGGAAG 238
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 467 AGAATAAGGCTATAGTTAGTTTAAATAGCAGTGAAATTGAAGATCAAATCTTTGAGGAAG 526
Query 239 AAGAAAGTGAGTCACAATGTTTATTGCCTCCAAGGAAAGGAGGTATGTCCAGAAGCACTG 298
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 527 AAGAAAGTGAGTCACAATGTTTATTGCCTCCAAGGAAAGGAGGCATGTCTAGAAGCACTG 586
Query 299 ACAAGATTAAGCGGACTGTGCAGTGGAATGACAACAAAGGAGACAATCTTGCTGAGGTTT 358
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 587 ACAAGATTAAGAGGACTGTGCAGTGGAATGACATTAAAGGAGACAATCTTGCTGAGGTTT 646
Query 359 TAGTTTATGAACCAAGCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGTATCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 647 TAGTTTATGAACCAAGCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGCATCT 706
Query 419 GCACAATTATGTAGTCCTCCAACCCACAATCAACCACCATTAACATGGAGTTTAACAATG 478
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 707 GCACAATTATGTAGTCCACCAATCCGCAATCAACCACCATTAACATGGAGTTTAACAATG 766
> AT2G33400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G04030.1);
Has 3875 Blast hits to 2949 proteins in 323 species: Archae
- 6; Bacteria - 281; Metazoa - 960; Fungi - 593; Plants -
281; Viruses - 98; Other Eukaryotes - 1656 (source: NCBI BLink).
| chr2:14152706-14154530 REVERSE LENGTH=1573
Length=1573
Score = 63.9 bits (34), Expect = 1e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 445 CAATCAACCACCATTAACATGGAGTTTAACAATG 478
||||||||||||||||||||||||||||||||||
Sbjct 1568 CAATCAACCACCATTAACATGGAGTTTAACAATG 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5