BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482283
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1256 0.0
AT2G33390.1 | Symbols: | unknown protein; Has 34 Blast hits to... 556 2e-157
> AT2G33400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G04030.1);
Has 3875 Blast hits to 2949 proteins in 323 species: Archae
- 6; Bacteria - 281; Metazoa - 960; Fungi - 593; Plants -
281; Viruses - 98; Other Eukaryotes - 1656 (source: NCBI BLink).
| chr2:14152706-14154530 REVERSE LENGTH=1573
Length=1573
Score = 1256 bits (680), Expect = 0.0
Identities = 814/877 (93%), Gaps = 15/877 (2%)
Strand=Plus/Plus
Query 55 TCTTCTTCTTCCTCTCAAGAATCAAAACCGAAAACAGAGAAACATCACCACCAATGGGAT 114
||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 78 TCTTCTTCTTCCTCTCAAGTATCGAAACCG-AAACAGAGAAACATCACCACCAATGGGAT 136
Query 115 GTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAACTCCATTAGGAAGA 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 137 GTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAATTCCATTAGGAAGA 196
Query 175 TCCTTCCTCGAGATCAAAGAATCTGTAGCTATGAACCGCTACTTTCTTCAGATCCGACAG 234
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 197 TCCTTCCTCGAGATCAAAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAG 256
Query 235 ATTTCAGTACTCTTTTAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGGTCCGCTG 294
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 257 ATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGGAGTGAGG 316
Query 295 TCAGGGGTGAAGT-GGAGGAGGAGAAGGTGACTAGGAAGACGAGGAAGAGAGTCCGATTT 353
| ||||| | || |||| || |||||||||||| ||||||||||||||||||| |||||
Sbjct 317 T-AGGGGAGGAGGAGGAGAAGAAGAAGGTGACTAAGAAGACGAGGAAGAGAGTCAGATTT 375
Query 354 GACTTGAATGTACAAACCTATGAACCTATTCTACCTTCTA-ATTATGAGAATGCTTGCAG 412
|||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||
Sbjct 376 GACTTGAATGTACAAACCTATGAACCTATTGTACCTTCAAGAT-ATGAGAATGCTTGCAG 434
Query 413 TGATGATGAAGAGGGGATAGGAGAAAGAAGCAATGGATCGTCGGTTATCGATAAGAGACC 472
||||||||||||||||| ||||| ||||||||| ||||| |||| ||| ||||||| |||
Sbjct 435 TGATGATGAAGAGGGGAAAGGAGGAAGAAGCAAGGGATCTTCGGCTATAGATAAGAAACC 494
Query 473 AGAGGATCTGAGCAGTAGATCTGTGTATCCTTCAAACTATAGATACCACAATTGTGTTGA 532
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 495 AGAGGATCTAAGCAGTAGATCTGTGTATCCTTCAAACTATAGATACCACAACTGTGTGGA 554
Query 533 TAGTTTTGAGGATGAAGACGA--AA-TGGGTTATGGAGAGAGTGATTTGGAAGATGAAGA 589
|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 555 TAGTTTTGAGGATGAAGATGATGAAATGGGTTATGGAGAGAGTGATTTGGAAGATGAAGA 614
Query 590 CTATTACACagatgatgaaaacgactatgaagatgatgctgctgatgaagatgaagaaga 649
||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 615 CTATTACACCGATAATGAAAACGACTATGAAGATGATGCTGATGATGAAGATGAAGAAGA 674
Query 650 agaagaCA-AG---GACCAGGACGTGACTCCTCTTTTGAATCCAGTGGAGAATCTTGCTC 705
|||||| | || || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 675 AGAAGA-AGAGAATGAGCAGGACGTGGCTCCTCTTTTGAATCCAGTGGAGAATCTTGCTC 733
Query 706 AGTGGAAAGCGGTTAAAGCAAGGCCGGTGAGAGTTAAACGGGTAATGAAAGAGAATGTTG 765
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 734 AGTGGAAAGCGGTTAAAGCAAGGCCAGTGAAAGTTAAACGGGTAATGAAAGAGAATGTTG 793
Query 766 AAGCAG-ATATGGATGATCAAGAAAAACCACTACTGAAGGAGATAATCGTCAATACTAGC 824
||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 794 AAG-AGGATATGGATGATCAAGCAAAACCACTACTGAAGGAGATAATCGTTAATACTAGC 852
Query 825 CTTTCAAATTGGTTGACCTCACCAAAGAGTTTTCATGGGAATGGTTCGTCGAAGAGATCC 884
||||| ||||||||| |||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 853 CTTTCCAATTGGTTGGCCTCACCAAAGAGTCTTCATGCGAATGGTTCATCGAAGAGATCC 912
Query 885 TCAATTGTGGATATCACCAACATGGAGAACAGATAAA 921
||||||||||||||||||||||||||||||| ||||
Sbjct 913 CCAATTGTGGATATCACCAACATGGAGAACAGGTAAA 949
Score = 712 bits (385), Expect = 0.0
Identities = 512/569 (90%), Gaps = 25/569 (4%)
Strand=Plus/Plus
Query 922 TTGTTTGTCTTTGTACCATTTCTGATTCTTTCTGTGTGTATGGATGGAGGTTTGTATCGG 981
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1000 TTGTTTGTCTTTGTAGCATTTCTGATTCTTTGTGTGTGTATGGATGGAGGTTTGTATTTG 1059
Query 982 TTTTCCCTTTTCGGG------TT---A----TTGTTTCTGCAACTAAATCTTGATA-AAG 1027
||||||||||| ||| || | ||||||||||||||| ||||||||| |||
Sbjct 1060 TTTTCCCTTTTAGGGCTATTCTTCCCACTGGTTGTTTCTGCAACTACATCTTGATACAAG 1119
Query 1028 TTGTGATCTTTCAACGTTTTTGGATCAACTACTATAAAAAGAGGAGAAAAAATATTGAAT 1087
||||||||||||||| |||||||||||| |||||||| |||| ||||||||||| | |||
Sbjct 1120 TTGTGATCTTTCAACTTTTTTGGATCAAGTACTATAAGAAGAAGAGAAAAAATAATAAAT 1179
Query 1088 TGCTGCATATTATACTT---A--TAACAAGTGTGTATGTTGC-AGAAACACTTACATAGT 1141
||||||||||||||||| | ||||||||||||||||| | ||||||| ||||||||
Sbjct 1180 TGCTGCATATTATACTTACAACTTAACAAGTGTGTATGTT-CGAGAAACAGATACATAGT 1238
Query 1142 ATACTATCAGAAC-CTGTCAAATCAAACATCACTCAAAGATCTTCGCTTTGAAGATCAGC 1200
|||||||| ||| ||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1239 TTACTATCAAAACACTGTCAAATCAAACAGCACTCGATGATCTTCGCTTTGAAGATCAGC 1298
Query 1201 TTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCCTGTCACTGAGATGAGAC 1260
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1299 CTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCTTGTCACTGAGATGAGAC 1358
Query 1261 AATCTGATATAGCTTATGAGTCTACATCTCTTGTTTGGACTGGCTTCTTGTCAGAAGT-- 1318
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1359 AATCTGATATAGCTTATGAGTCTAAATCCCTTGTTTGGACTGGCTTCTTGTCAGAAGTCA 1418
Query 1319 CCTGAGCACAAAAATCAGACAATTACATGATTGTGAAGTCCAATCGTTTAAGTTCTCGTT 1378
||| |||| |||||||||||| |||||||||||||| | ||||||| | |||||||||||
Sbjct 1419 CCTTAGCATAAAAATCAGACAGTTACATGATTGTGATGCCCAATCGCTCAAGTTCTCGTT 1478
Query 1379 CGTCTGTCCTCACAAAAACTGATTGCTGAAAAGAAGTCAGA-TACAAGGACGAGCTCATT 1437
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1479 TGTCTGTCCTCACAAAAACTGATGGCTGAAAAGAAGTCAGATTACAAGGACGAGCTCATT 1538
Query 1438 GTTAAACTCCATGTTAATGGTGGTTGATT 1466
|||||||||||||||||||||||||||||
Sbjct 1539 GTTAAACTCCATGTTAATGGTGGTTGATT 1567
> AT2G33390.1 | Symbols: | unknown protein; Has 34 Blast hits
to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:14151135-14153118 FORWARD
LENGTH=1140
Length=1140
Score = 556 bits (301), Expect = 2e-157
Identities = 373/406 (92%), Gaps = 11/406 (3%)
Strand=Plus/Minus
Query 1071 GAGAAAAAATATTGAATTGCTGCATATTATACTT---A--TAACAAGTGTGTATGTTGC- 1124
||||||||||| | |||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1138 GAGAAAAAATAATAAATTGCTGCATATTATACTTACAACTTAACAAGTGTGTATGTT-CG 1080
Query 1125 AGAAACACTTACATAGTATACTATCAGAAC-CTGTCAAATCAAACATCACTCAAAGATCT 1183
||||||| |||||||| |||||||| ||| ||||||||||||||| ||||| | |||||
Sbjct 1079 AGAAACAGATACATAGTTTACTATCAAAACACTGTCAAATCAAACAGCACTCGATGATCT 1020
Query 1184 TCGCTTTGAAGATCAGCTTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCC 1243
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCGCTTTGAAGATCAGCCTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCT 960
Query 1244 TGTCACTGAGATGAGACAATCTGATATAGCTTATGAGTCTACATCTCTTGTTTGGACTGG 1303
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 959 TGTCACTGAGATGAGACAATCTGATATAGCTTATGAGTCTAAATCCCTTGTTTGGACTGG 900
Query 1304 CTTCTTGTCAGAAGT--CCTGAGCACAAAAATCAGACAATTACATGATTGTGAAGTCCAA 1361
||||||||||||||| ||| |||| |||||||||||| |||||||||||||| | ||||
Sbjct 899 CTTCTTGTCAGAAGTCACCTTAGCATAAAAATCAGACAGTTACATGATTGTGATGCCCAA 840
Query 1362 TCGTTTAAGTTCTCGTTCGTCTGTCCTCACAAAAACTGATTGCTGAAAAGAAGTCAGA-T 1420
||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 839 TCGCTCAAGTTCTCGTTTGTCTGTCCTCACAAAAACTGATGGCTGAAAAGAAGTCAGATT 780
Query 1421 ACAAGGACGAGCTCATTGTTAAACTCCATGTTAATGGTGGTTGATT 1466
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACAAGGACGAGCTCATTGTTAAACTCCATGTTAATGGTGGTTGATT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5