BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482286
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening... 1232 0.0
> AT2G33430.1 | Symbols: DAL1, DAL | differentiation and greening-like
1 | chr2:14162667-14165042 FORWARD LENGTH=1038
Length=1038
Score = 1232 bits (667), Expect = 0.0
Identities = 725/754 (96%), Gaps = 0/754 (0%)
Strand=Plus/Plus
Query 1 CAAAACCCTATCCACTTTACTCTAAACCTCCATTGCCTTCGTCTTTCTTCCTCAGTCGCC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CAAAACCCTATCCACTTTACTCTAAACCTCCATTACCTTCGTCTTTCTTCCTCAGTCGCC 60
Query 61 CTACAATGGCCTTGCCTTTGTCTGGCACGCGCCACCTCACGCGAGCTCTCCTCTCTAATG 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CTACAATGGCTTTGCCTTTGTCTGGCACGCGCCACCTCACGCGCGCTCTCCTCTCTAATG 120
Query 121 TCACCCTAATAGCTCCTCCTCGGATTCCTTCCTCTGTTCACTGCGGTGGATCTCGGTTAG 180
|||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCACTCTTATGGCTCCTCCTCGGATTCCTTCCTCTGTTCACTACGGTGGATCTCGGTTAG 180
Query 181 GTTGCTCGACCCGGtttttttCAATTCGATGCGGAGCTAACCGGTCAGGCTCTGCTTACT 240
|||| ||||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 181 GTTGTTCGACCCGGTTCTTCTCAATTCGATGTGGAGCTAACCGGTCAGGTTCTACTTACT 240
Query 241 CGCCGCTTAACTCTGGCTCTAACTTTAGTGATCGGCCTCCGACGGAGATGGCTCCTTTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCGCTTAACTCTGGCTCTAACTTTAGTGATCGGCCTCCGACGGAGATGGCTCCTTTGT 300
Query 301 TTCCGGGATGTGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGTGAAGGTG 360
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 301 TTCCGGGATGCGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGGGAAGGCG 360
Query 361 CGACGAAGCAGCAGATGATTGATTGCTACATTCAAACCTTAGCTAAAGTCGTTGGAAGTG 420
|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 361 CGACTAAGCAGCAGATGATTGATTGTTACATTCAAACCCTAGCGAAAGTCGTTGGAAGTG 420
Query 421 AGGAAGAGGCGAAGAAGCGAATCTACAATGTTTCGTGTGAGAGGTATTTAGGGTTTGGCT 480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 421 AGGAAGAGGCGAAGAAGCGAATCTACAATGTTTCATGTGAGAGGTATTTAGGGTTTGGTT 480
Query 481 GTGAGATTGATGAAGAGACATCGACTAAGCTTGAAGGTTTACCTGGTGTTCTGTTTGTGC 540
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 481 GTGAGATTGATGAAGAGACATCCACTAAGCTTGAAGGTTTACCAGGTGTTCTGTTTGTGC 540
Query 541 TTCCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGTTTGTTAATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGTTTGTTAATG 600
Query 601 GAGAGATAGTCCAACGATCACCAGAGAGGCAGAGGCGAGTTGAGCCGCAGCCGCAGAGAG 660
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 601 GAGAGATAGTCCAACGATCACCAGAGAGGCAGAGGCGGGTTGAGCCACAGCCGCAGAGAG 660
Query 661 CCCAAGATAGACCAAGATACAATGACAGAACTCGTTACTCTCGCCGCAGAGAAAACACAA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCCAAGATAGACCGAGATACAATGACAGAACTCGTTACTCTCGCCGCAGAGAAAACACAA 720
Query 721 GATGAACTGTAACTGAAGAAGGTATACACACACC 754
||||||||||||||||||| |||||||| |||||
Sbjct 721 GATGAACTGTAACTGAAGATGGTATACATACACC 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5