BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482291
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33470.1 | Symbols: GLTP1, ATGLTP1 | glycolipid transfer pro... 1192 0.0
> AT2G33470.1 | Symbols: GLTP1, ATGLTP1 | glycolipid transfer protein
1 | chr2:14176363-14178651 REVERSE LENGTH=1121
Length=1121
Score = 1192 bits (645), Expect = 0.0
Identities = 874/973 (90%), Gaps = 61/973 (6%)
Strand=Plus/Plus
Query 1 AATTATTATTTTCTAAAA-GAAGAGCCGTTTaaaaagaaaaagagaaaaTTCTAACTCCA 59
|||||||||||||||||| | |||||||||| ||||| ||||||||| |||||||||||
Sbjct 112 AATTATTATTTTCTAAAACG-AGAGCCGTTT--AAAGAGAAAGAGAAATTTCTAACTCCA 168
Query 60 GAGAGC---G-A-A-AGT-----AGCAGAAGAATCTG----ATCCCA-CTTTTGTCAATT 103
|||||| | | | | | || || |||||||| |||||| ||||| ||||||
Sbjct 169 GAGAGCGAAGAACACAATCCCAGAGTAGCAGAATCTGATCCATCCCACCTTTT-TCAATT 227
Query 104 CTCAGGCAAAGGTACGAtttttttCTCCT-TCTCCGCT-AG--AGATTTG--AAAATGGA 157
|||||||||| || | ||| |||| | | || | | || | | ||| ||||||||
Sbjct 228 CTCAGGCAAA-GT--G--TTTGATCTCATAT-TCAGATAAGTCAAACTTGAAAAAATGGA 281
Query 158 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAGTCTGAACAAGGCGA 217
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 282 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGA 341
Query 218 GATGCTTACTAAGCCGTTTTTAGAGCTCTGCAAGACCATCTTGCCTGTTATAGATAAATT 277
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 342 GATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGATAAATT 401
Query 278 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 461
Query 338 GAACTACTTGTCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 397
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAACTACTTATCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 521
Query 398 CGAGTCTAAGACAGCAAAAGGATCGTCTAGCTGTACCAACGGTCTTCTCTGGTTAACCAG 457
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 522 TGAGTCTAAGATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG 581
Query 458 AGCAATGGATTTCTTGGTGGAGCTGTTCCGCAACTTGGTAGCACATCAAGACTGGTCAAT 517
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 582 AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGACTGGTCAAT 641
Query 518 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCATGGATGGCTCGC 577
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 642 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCACGGATGGCTCGC 701
Query 578 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCAGACAGGAAGAAGTTCATGGATGT 637
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 702 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCGGACAGGAAGAAGTTCATGGATGT 761
Query 638 CATATCTGGTTCTGGTGACATCCATGCCGACATGGAAAGGTTTTGCGCTGAGTTTGGTCC 697
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 762 CATATCTGGTTCTGGTAACATCCAAGCCGACATGGAAAGGTTTTGTGCTGAGTTTGGTCC 821
Query 698 GTTTCTTCAAGATAATCACAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 757
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 822 GTTTCTTCATGATAATCATAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 881
Query 758 TTGAGTCATCATATGATTATCGCCGGTATCGAATCTTCTTTGCCGGAATCTTTGTCAGTT 817
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 882 TTAAGTCATCATATGATTATCGCCGGTATCAAATCTTCTTTGCCGGAATCTTTGTCTGTT 941
Query 818 TTAACTTT---------AA--A-AGAAAC---A----GAA------TAATGTGTCGGTTT 852
|||||||| || | |||| | | ||| |||||||| |||||
Sbjct 942 TTAACTTTTCTCCTTCCAATTATAGAACCTCCAAAAAGAAACAGAATAATGTGTTGGTTT 1001
Query 853 TTATCTGAATGTTCACTTTACATTATATAAGTTTATAACATACGAATCAATCTTATCAGC 912
||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||| |
Sbjct 1002 CTATCTGAATGTTCACTTTATATTACA-A-GTT-ATAACATACGAATCAATCTTATCAAC 1058
Query 913 TCTTCTTGTTAAT 925
|||||||||||||
Sbjct 1059 TCTTCTTGTTAAT 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5