BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482294
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33480.1 | Symbols: ANAC041, NAC041 | NAC domain containing ... 1059 0.0
> AT2G33480.1 | Symbols: ANAC041, NAC041 | NAC domain containing
protein 41 | chr2:14181186-14182402 FORWARD LENGTH=1051
Length=1051
Score = 1059 bits (573), Expect = 0.0
Identities = 919/1067 (86%), Gaps = 99/1067 (9%)
Strand=Plus/Plus
Query 1 TAAAATAAACCAAACTTTCCCTCTCCATTTTCAATAATCTCTCATCTTCTTTCGTCTCTC 60
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAAATAAGCCAAACTTTACCTCTCCATTTTCAATAATCTCTCATCTTCTTTCGTCTCTC 60
Query 61 TTTCTACGGTTCAAAC------------GATGGAGAAGCGAAGCTTTATTAAGAACAGAG 108
|||||||||||||||| |||||||||| | |||| |||||| |||||||
Sbjct 61 TTTCTACGGTTCAAACATTAAAAAGATAGATGGAGAAGAGGAGCTCTATTAAAAACAGAG 120
Query 109 GAGTACTTAGATTACCACCTGGGTTCCGATTCCACCCGACCGATGAAGAGCTAGTGGTTC 168
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTC 180
Query 169 AATATTTACGTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTTATACCGGAAACCG 228
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 AATATTTACGTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCG 240
Query 229 ATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGAGAGGTATTTTT 288
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 ATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGAGATGTATTTTT 300
Query 289 TCAGCACAAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACTGGTTCAG 348
| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 301 TTAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGG 360
Query 349 GTTATTGGAAAGCGACTGGTATCGATAAGCAAATCGGTAAGAAGAAGCTTGTCGTGGGGA 408
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 361 GTTATTGGAAAGCGACTGGTCTCGATAAGCAGATCGGTAAGAAGAAGCTTGTCGTGGGGA 420
Query 409 TGAAGAAAACTCTGGTTTTCTACAAAGGTAAACCACCAAACGGGACAAGAACTAACTGGG 468
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 TGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGG 480
Query 469 TTCTTCATGAATATCGTCTTGTTGATTCACAACAAGAATCATCATATGGACAGAACATGA 528
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 481 TTCTTCATGAATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGA 540
Query 529 ATTGGGTTCTGTGTCGAGTGTTCTTgaagaagagaagcaatag---tact-a-a--taat 581
|||||||| ||||| |||||||||||||||||||||||||||| || | | | ||
Sbjct 541 ATTGGGTTTTGTGTAGAGTGTTCTTGAAGAAGAGAAGCAATAGTAATAGTAAGAGGAAAG 600
Query 582 aaga-g-gaaagaaga--t-gagaa--ag-aagagattgaga-atgagaaag-a--t-a- 627
|||| | ||||||||| | ||||| || |||||| |||| | |||| || | | |
Sbjct 601 AAGATGAGAAAGAAGAGGTGGAGAATGAGAAAGAGACAGAGACA-GAGAGAGAACGTGAG 659
Query 628 -a--ag-a-ga-aaga-tACTTGTCCCATTTTTTATGACTTTATGagaaaagacatgaag 680
| || | | |||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 660 GAGGAGAACAAGAAGAGTACTTGTCCCATATTTTATGACTTTATGAGAAAAGACACGAAG 719
Query 681 aaaaagagaagaagaagaagaagaTGCTGTGATTTGAATTTGACTCCTGCTACGTCTACG 740
||||||||||| | |||||||||||||||||||||||||||||||||||||| | | |
Sbjct 720 AAAAAGAGAAG--G-AGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTAC-T-T--G 772
Query 741 T-GTTGTTGTTCTTCTTCTTCATCAGCGTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAAC 799
| ||||||| || ||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 773 TTGTTGTTG--CT-CTTCTTCG--A-CTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAAC 826
Query 800 TCACACATCTTCTAATAATAATC---A-----TCA-T----G--AAAATAAGTTTTGTTT 844
|||||||||||||||| |||||| | ||| | | ||||||||||||||||
Sbjct 827 TCACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTT 886
Query 845 GTTTCTCTAGATT-------TT---AAC---TT-TAATAAATT-AAT---TTA--TTATG 884
|||||| |||||| || ||| || || ||| || ||| ||| |||||
Sbjct 887 GTTTCTATAGATTAACAAACTTGGGAACAACTTCTATTAACTTTAATAAATTAGATTATG 946
Query 885 ATTA---CCAAAGTGA-TTATTTTCTC-ATGGTTGTTTTTCTTGGTGTTGGTAATTAATA 939
||| ||||||| | |||| || | || || ||||||||| |||||||||||||
Sbjct 947 ATTGTTTCCAAAGTTAATTATGCAATCCA-GGA-GTCTTTCTTGGTTTTGGTAATTAATA 1004
Query 940 GCCACATTTTTTAGCGTATCTAATT--ATCAAATATTGAAAACTGGT 984
|||| ||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 1005 GCCATATTTTATAGCTTATCTAATTGTATCAAATATTGAAAACTGGT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5