BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482302
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding unin... 1989 0.0
> AT2G33560.2 | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited
by benzymidazol 1) | chr2:14213633-14215999 REVERSE
LENGTH=1449
Length=1449
Score = 1989 bits (1077), Expect = 0.0
Identities = 1256/1339 (94%), Gaps = 25/1339 (2%)
Strand=Plus/Plus
Query 1 AACTAACGGCTATATTCCCT-TGAAT-TTCAAAAATTTCTCAAGTCCAGCGAAGAAACGA 58
||||||||||||||||| || || || ||| |||| || | | | |||||||||||
Sbjct 30 AACTAACGGCTATATTCTCTCTG-ATATTC-AAAA-TT-T---G--C-TCGAAGAAACGA 79
Query 59 CGATGGCCA-CCGAAACGAGGGTTCAGATCTCAGATCCAGAGTCAGAATTTCTGAACTCG 117
|||||| || ||||||||| ||||||| | |||||||||||| |||| ||||| || |||
Sbjct 80 CGATGG-CAGCCGAAACGAAGGTTCAGGTTTCAGATCCAGAGGCAGAGTTTCTTAATTCG 138
Query 118 AAGCAGGAGACTGGTTACGAGTGGGAGCTTTTCAAGGAGAACGTCCGGCCATTGAAGAGA 177
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AAGCAGGAGACTGGATACGAGTGGGAGCTTTTCAAGGAGAACGTCCGGCCATTGAAGAGA 198
Query 178 GGTCGCAATGTTGGTATTCTCAACCACGCTCTCAAATCTCACTCCGACCACCAATTGAGG 237
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 199 GGTCGCAATGTTGGTATTCTCAACCACGCTCTCAAATCTCACTCTGACCACCAATTGAGA 258
Query 238 AAGAATCTCATCGAGAAACGAAGGAATTTGATTGAAGCCATTGATGAGTATGATGGAGAC 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 259 AAGAATCTCATCGAGAAACGCAGGAATTTGATTGAAGCCATTGATGAGTATGAAGGAGAT 318
Query 298 GACCCTTTGTTTCCATGGATTGAGTGTATAAAATGGGTACAAGAGGCTTTTCCACCAGGA 357
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 319 GACCCTTTATCTCCATGGATAGAGTGTATAAAATGGGTACAAGAGGCTTTTCCACCAGGA 378
Query 358 GGAGAATGCTCAGGACTGTTAGTGATATATGAGCAGTGTGTTCGCAAGTTTTGGCACTCT 417
|||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 379 GGAGAATGTTCAGGACTGTTAGTGATATATGAGCAATGTGTTCGTAAATTTTGGCACTCT 438
Query 418 GAACGTTACAAGGATGATCTTCGTTATCTCAAAGTCTGGTTGGAATATGCGGAGCATTGC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 439 GAACGTTACAAGGATGATCTTCGTTATCTTAAAGTCTGGTTGGAATATGCGGAGCATTGC 498
Query 478 TCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGACATTGGAAAGACACATGCT 537
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 499 GCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGAAAGACACATGCT 558
Query 538 GTCTACTACATAGCTTATGCTTTGCACATGGAGTTTAAGAACAAGGTGAAAACTGCTAAT 597
|||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 559 GTCTACTATATAGCTTATGCTTTGCACATTGAGTTTAAGAATAAGGTCAAAACTGCTAAT 618
Query 598 GAGATCTTCAATCTCGGAATCTCTAGAAATGCAAAGCCAGTGGAAAAGTTGAATGATGCG 657
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 619 GAGATCTTCAATCTTGGAATCTCTAGGGATGCAAAGCCAGTGGAAAAGTTGAATGACGCG 678
Query 658 TACAAGAAGTTCATGGTGAGAACGATGAGAAGGTCCAACACAGCTGATG---AGGAACCA 714
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 679 TACAAGAAGTTTATGGTGAGAACGATGAGAAGGTCCAACACAGCTGATGAACAGGAACCA 738
Query 715 AAGGAGAATAATGACTTACCGTCAAGAAGCTTTGGCACTTTATTGTCCAGGGGAGATAAT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAGGAGAATAATGACTTACCGTCAAGAAGCTTTGGCACTTTATTGTCCAGGGGAGATAAT 798
Query 775 AATGCAAGAAGGCAGGCGTTAGGAAGTTCTAACCCACAAGCCAAAAAACTAAAGCCAAAT 834
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 799 AATGCAAGAAGGCAGGCGTTAGGAAGTTCTAACCCACAAGCCAAAAAGCTAAAGCCAAAT 858
Query 835 CACTCATCCAAGACACCTTTTCCTATCTACACAGATGCAGTTTCAGACACTACATCAGGG 894
|| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 859 CAATCATCCAAGACACCTTTTGCTATCTACGCAGATGCAGTTTCAGACACCACATCAGGG 918
Query 895 AATCAACCAGAGTCAGACAAGTCAAAACCAGAGTTTGGTAGTTGGCTCATGCTTGGAGGC 954
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 919 AATCAACCAGAGTCAGACAAGTCAAGACCAGAGTTTGGTAGTTGGCTCATGCTTGGAGGC 978
Query 955 AGAGCAGAGAGGAACAAAGAAAACAATTCTTTACCTAGAAAATGGGCATCATTCAAGGTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AGAGCAGAGAGGAACAAAGAAAACAATTCTTTACCTAGAAAATGGGCATCATTCAAGGTT 1038
Query 1015 CCTCAGAAACCCATTGTGAGAACTG---CAGCAGCCTCTGCTTCCACCTTTGAGGTTTTT 1071
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1039 CCTCAGAAACCCATTGTGAGAACTGTTGCAGCAGCATCTGCTTCCACCTTTGAGGTTTTT 1098
Query 1072 GTCGATGAAGAAGAATGCACAGAAGAGGGAGGAGACAAGAAGAAGAATGATGAAACTATC 1131
||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||
Sbjct 1099 GTCGATGAAGAAGAATGTACAGAAGAGGAAGAAGAAAAGAAGAAGAATGATGAAACTATC 1158
Query 1132 TCATCATCATCAAACGTTCTACCCCTTCATGACGGCCGTGACATAAAGAAAGAAACAGAG 1191
|||||||||||||||||||| |||||| ||| ||||||||| ||||| ||||||||||||
Sbjct 1159 TCATCATCATCAAACGTTCTGCCCCTTAATGGCGGCCGTGAGATAAAAAAAGAAACAGAG 1218
Query 1192 CTGCTGCGACAGAACCCTTTAAGACATTTCCCACCCAGCAGCTTCCTACGATGATGATGA 1251
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1219 CTGCTACGACAGAACCCTTTAAGACATTTCCCACCCAACAGCTTCCTACGATGATGAT-A 1277
Query 1252 TATTAGACATTCATCTCTACACGATGTTCTGGTTTGAGATTTGAGCTTTTGTCTATAAAG 1311
| | ||| ||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1278 T-TG-GACTTTCTTCTCTACACGATCTTATGGTTTGAGATTTGAGCTTTTGTCTATAAAG 1335
Query 1312 CTCCTTGTATTTGTTTTTG 1330
|||||||| | |||||||
Sbjct 1336 CTCCTTGTGT--GTTTTTG 1352
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1320 ATTTGTTTTTGTGATGTACTGGGATATAC 1348
|||||||||||||||||||||||||||||
Sbjct 1362 ATTTGTTTTTGTGATGTACTGGGATATAC 1390
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5