BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482304
Length=2204
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33580.1 | Symbols: | Protein kinase superfamily protein | ... 3131 0.0
> AT2G33580.1 | Symbols: | Protein kinase superfamily protein
| chr2:14219623-14221861 REVERSE LENGTH=2239
Length=2239
Score = 3131 bits (1695), Expect = 0.0
Identities = 2050/2216 (93%), Gaps = 46/2216 (2%)
Strand=Plus/Plus
Query 1 AACACCACAAAACATGGCTGCGCGTACACTCCACGCGCTGTCAGTCTCCACCTTGTTCCT 60
|||||||||||||||||||||| |||||||||||||||| |||| | |||||| |||||
Sbjct 7 AACACCACAAAACATGGCTGCGTGTACACTCCACGCGCTCTCAG--T-CACCTTATTCCT 63
Query 61 CCTCCTCCTCTTCTTCGCCGCATCACCAGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120
||| | |||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 64 CCT--T-CTCTTCTTTGCCGTGTCACCGGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120
Query 121 CCAGCTCGCCTGCGAGGTCCGCGAT-TTCGACAACATAACCAACGGATTCACATGTAACG 179
||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 121 CCAGCTCGCCTGCGAGGTCCGTG-TCTACGACAACATAACCAACGGATTCACATGTAACG 179
Query 180 GCCCAACC-TCTTGCCGCTCTTACCTCACTTTCTATTCTCAACCACCGTACAACACGGCG 238
|||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GCCC-ACCTTCTTGCCGCTCATACCTCACTTTCTGGTCTCAACCACCGTACAACACGGCG 238
Query 239 GACTCAATCGCCAAACTCCTCAACGTTTCTGCCGCAGAGATCCAATCAATCAACAAACTT 298
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 239 GACTCAATCGCCAAACTCCTCAACGTCTCCGCCGCAGAGATCCAATCAATCAACAACCTC 298
Query 299 CCCACCGTCACCACCAGAATCCGTACCCGTGACTTGGTCGTGATCCCAGCTAACTGctcc 358
||||| | |||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 299 CCCACAGCCACCACCAGAATCCCAACCCGTGAATTAGTCGTGATCCCAGCTAACTGCTCC 358
Query 359 tgctcctcctcctcctcctcctccGGAGGATTTTACCAGCACAACGCCACTTACAATCTC 418
|| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 359 TG---------CTCCTCCTCCAGCGGAGGATTTTACCAACACAACGCCACTTACAATCTC 409
Query 419 TCCGGCAACAGAGGAGTA-GAGACGTATTTCTCGGTGGCTAACGATACTTACCAAGCTTT 477
||||| |||||||||| | || || |||||||| ||||||||||||||||||||||||||
Sbjct 410 TCCGGTAACAGAGGAG-ATGAAACCTATTTCTCAGTGGCTAACGATACTTACCAAGCTTT 468
Query 478 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAAAGAACTAACCCCCGG 537
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 469 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAGACAACTAACCCCCGG 528
Query 538 ATTAAACCTCCTTGTTCCTCTCCGATGTGCTTGCCCCACCGCGAATCAAA-CAGCCGCCG 596
|||||||||||||||||||||||||||||||| |||||||| || |||| || ||||||
Sbjct 529 CTTAAACCTCCTTGTTCCTCTCCGATGTGCTTGTCCCACCGCCAAACAAACCA-CCGCCG 587
Query 597 GATTTAAATATCTCTTGACTTACTTAGTCGCCAGGGGAGATAGTATCTCCGTCATCGCCG 656
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 588 GATTTAAATATCTCCTGACTTACTTAGTCGCCATGGGAGATAGTATCTCCGGCATCGCCG 647
Query 657 ATAGGTTCAATAGCACAACCGCCGCTATAACCGAAGGTAACGAGCTTACATCAGAAGACA 716
| | |||||| |||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 648 AGATGTTCAACAGCACATCCGCCGCCATAACCGAAGGTAACGAGCTTACATC---AGACA 704
Query 717 CTATCTACTTCTTCACGCCGGTGCTTGTTCCTCTCAGAACTGAACCTACCAAAATCGTGA 776
||||| ||||||||| ||||| || |||||||||| ||||||||||||||||||||| |
Sbjct 705 ATATCTTCTTCTTCACACCGGTTCTAGTTCCTCTCACAACTGAACCTACCAAAATCGTTA 764
Query 777 AATCTCCGTCACCTCCTCCTCCACCTGTTATTGTTACGCCGCCTCAAACGCCGGTGGATC 836
||||||||| |||||||||||||| ||| ||| |||||||||||||||||| || ||||
Sbjct 765 TATCTCCGTCGCCTCCTCCTCCACCCGTTGTTGCTACGCCGCCTCAAACGCCAGTTGATC 824
Query 837 CTCCGGGATCTTCTTCTTCTTCTCACAAATGGATTTACATCGGAATTGGAATCGGAGCTG 896
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 825 CTCCGGGA---TCTTCTTCTTCTCACAAATGGATCTACATCGGAATTGGAATCGGAGCTG 881
Query 897 GTTTGCTTCTCTTAATCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 956
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTTTGCTTCTCTTACTCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 941
Query 957 AGTCATCGTCGTCGTCGTTACCGGAGGAGAATAAGCTCTTTGATTCATCAAACAAACAAT 1016
|||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 942 AGTCATTACCGTCGTCGTTGCCGGAGGAGAACAAGCTCTTTGATTCATCAACCAAACAAT 1001
Query 1017 CTATT-CC-C-ACAACAACGACTCAATGGTCAACAGATTTATCCAATTCATCAGAAGCTT 1073
||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1002 CTATTCCCACAACAACAACGACTCAATGGTCAATAGATTTATCCAATTCATCAGAAGCTT 1061
Query 1074 TTGGTCTT-AAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCC 1132
| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TCGGT-TTAAAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCA 1120
Query 1133 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACGATC 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1121 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACAATC 1180
Query 1193 AACGGAGATGATGCGGCGGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCCGAGATCAAC 1252
||||| || ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1181 AACGGCGACGATGCCGCTGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCTGAGATCAAT 1240
Query 1253 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCCGGTTTCTGTATCCGCGAA 1312
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1241 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCAGGTTTCTGTATCCGTGAA 1300
Query 1313 GGAACCTCGTACCTTGTCTTCGAGTATTCGGAGAATGGATCGATCAGTGATTGGCTTCAC 1372
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1301 GGAACATCGTACCTCGTCTTCGAGTATTCAGAGAATGGATCGATCAGTGATTGGCTTCAC 1360
Query 1373 TCGTCGGACAAGAAAACTCTGACATGGAAACAGAGAGTTGAAATAGCTAGGGATGTAGCA 1432
||||||| |||||| | | |||||||||||||||||||||||||||| |||||||| |||
Sbjct 1361 TCGTCGGGCAAGAAGAGTTTGACATGGAAACAGAGAGTTGAAATAGCAAGGGATGTGGCA 1420
Query 1433 GAGGCATTAGACTATCTTCATAACTATATAACTCCACCTCATATCCACAAGAACTTGGAA 1492
||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1421 GAGGCGTTAGATTATCTCCATAACTATATAACTCCACCTCATATTCATAAGAACTTGGAA 1480
Query 1493 TCAACCAACATACTTCTTGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGGGTTGCG 1552
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1481 TCAACAAACATACTTCTGGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGTGTTGCG 1540
Query 1553 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1600
Query 1613 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATAACTCCGAAGCTAGACGTGTTT 1672
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1601 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATTACTTCGAAACTAGACGTGTTT 1660
Query 1673 GCTTTTGGAGTTGTGGTTCTTGAGCTTCTTTCAGGGAGAGAAGCAGTGACGATACATaag 1732
||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1661 GCTTTTGGAGTTGCGGTTCTTGAGCTTCTTTCGGGGAGAGAAGCAGTAACGATACATAAG 1720
Query 1733 aagaaggagaaggaagaggaagaagaagTGGAGGTGTTGTGTAAAGTGATAAACAATGTG 1792
|||||||| | ||| || | |||||||||||| ||||||||||||||||||||| ||||
Sbjct 1721 AAGAAGGA-A-GGA-GA--A-GAAGAAGTGGAGATGTTGTGTAAAGTGATAAACAGTGTG 1774
Query 1793 CTTGGAGGAGAGAATGTGAGAGAGAAGCTAAAAGAGTTCATGGATCCATCTCTAGGGAAT 1852
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1775 CTTGGAGGAGAGAATGTGAGAGAGAAGTTAAAAGAGTTTATGGATCCATCTCTAGGGAAT 1834
Query 1853 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCCAAGAGCTGTGTCGCAACT 1912
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1835 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCTAAGAGCTGTGTCGCAACT 1894
Query 1913 GATCTTAACTCGCGTCCATCTGTCACGCAGGTTCTAACCACGCTTTCGATGATAGTCTCC 1972
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1895 GATCTTAACTCGCGTCCATCTGTCACTCAGGTTCTAACCACGCTCTCAATGATCGTCTCC 1954
Query 1973 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCGGGCTCACTTGGCAACTAG 2032
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1955 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCCGGCTCTCTTGGCAACTAG 2014
Query 2033 TTTAGttttttttttCTTATTGGTAGTCAATAA---GTATTTAGA-TTTAAGATAAGGAC 2088
|| |||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||
Sbjct 2015 TTCAGTTTTTTTTTTCT-ATTGGTAGTCAATAACAAGTATTTAGACTTTA-GATAAGGAC 2072
Query 2089 CATAAGGCTAAAAAGTTGAGATCAAATAAGTACCACACTGTGAAACAAAGTAATAAGAAC 2148
|||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct 2073 CATACGGCTAAAAAGTTGAGATCTAATAAGTACCCCACTGTGAAACATAGTAATAAGAAC 2132
Query 2149 ATATCATAGAGAAACTTTATTTAGATCTTGGCATGTTATTTCAGTAGTCTTTTGTA 2204
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 2133 ATATCATAGAGAAACTTTATTTAGATTTTGACATGTTGCTTCAGTAGTCTTTTGTA 2188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109336787010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5