BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482309
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33620.1 | Symbols: | AT hook motif DNA-binding family prot... 1598 0.0
> AT2G33620.1 | Symbols: | AT hook motif DNA-binding family protein
| chr2:14234220-14236883 FORWARD LENGTH=1629
Length=1629
Score = 1598 bits (865), Expect = 0.0
Identities = 1071/1164 (92%), Gaps = 39/1164 (3%)
Strand=Plus/Plus
Query 451 GTGAGAAGAAAATGTCAGGATCTGAGACGGGTTTTATGGCGGCGACCAGAGATTCAATGC 510
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 243 GTGAGAAGAAAATGTCAGGATCTGAGACGGGTTTAATGGCGGCGACCAGAGAATCAATGC 302
Query 511 AATTTACAATGGCTCTCCACCAGCAGCAGCAGCAACGCAGTCAAGCTCAACCTCAGCAGT 570
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 303 AATTTACAATGGCTCTCCA-C--CAGCAGCAGCAACACAGTCAAGCTCAACCTCAGCAGT 359
Query 571 CTCAGAACATGCAATTGTCATTCGGTGGAGACGACGGAGCCGCTCTTTACAAGCAGCCGA 630
||||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 360 CTCAGAACAGGCCATTGTCATTCGGTGGAGACGACGGAACTGCTCTTTACAAGCAGCCGA 419
Query 631 TGAGATCAGCATCACCACCGCAGCAGTACCAACCCAACTCAGCTGGTGAGAATCCTGTCT 690
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 TGAGATCAGTATCACCACCGCAGCAGTACCAACCCAACTCAGCTGGTGAGAATTCTGTCT 479
Query 691 TGAACATGAACATGCCCGGAGGTGAG-CATGGA-GC-CG--T-G-ACTGGAAGTGAGCCT 743
||||||||||| |||||||||||||| | |||| || | | | ||||||||||||||
Sbjct 480 TGAACATGAACTTGCCCGGAGGTGAGTC-TGGAGGCATGACTGGAACTGGAAGTGAGCCA 538
Query 744 GTGAAGAAGAGGAGAGGTAGACCAAGGAAATACGGACCTGACAGTGGTGAAACGTCACTT 803
||||| ||||||||||||||||| |||||||| || ||||| |||||||||| |||||||
Sbjct 539 GTGAAAAAGAGGAGAGGTAGACCGAGGAAATATGGGCCTGATAGTGGTGAAATGTCACTT 598
Query 804 GGTTTGGTTTCTGGAGCTCCTTCTTTCACTGTGAGCCAACCT-GTTAGCGGCGGTGGTGG 862
|||||| | |||||||||||||||||||||| ||||||||| | ||||||||| | |||
Sbjct 599 GGTTTGAATCCTGGAGCTCCTTCTTTCACTGTCAGCCAACCTAG-TAGCGGCGGCGATGG 657
Query 863 AGGAGAGAAGAAGATGAGAGGAAGACCTCCTGGTCCTTCTAGCAAAAGGCTCAAGCTTCA 922
|||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 AGGAGAGAAG-A-A-GAGAGGAAGACCTCCTGGTTCTTCTAGCAAAAGGCTCAAGCTTCA 714
Query 923 AGCCTTAGGCTCGACGGGAATCGGATTTACGCCTCACGTACTTAACGTGATGACTGGAGA 982
||| ||||||||||| |||||||||||||||||||| ||||||| |||| || |||||||
Sbjct 715 AGCTTTAGGCTCGACTGGAATCGGATTTACGCCTCATGTACTTACCGTGCTGGCTGGAGA 774
Query 983 GGATGTATCATCAAAGATAATGGCGTTAGCTCATAATGGACCACGTGCTGTGTGTGTCTT 1042
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 775 GGATGTATCATCCAAGATAATGGCGTTAACTCATAATGGACCCCGTGCTGTGTGTGTCTT 834
Query 1043 GTCTGCAAATGGAGCCATCTCCAATGTGACTCTCCGCCAGTCTGGCACATCCGGTGGAAC 1102
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 835 GTCTGCAAATGGAGCCATCTCCAATGTGACTCTCCGCCAGTCTGCCACATCCGGTGGAAC 894
Query 1103 CGTTACATATGAGGGGAGATTTGAGATTCTGTCTTTATCGGGATCGTTCCATTTGCTGGA 1162
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 895 TGTTACATATGAGGGGAGATTTGAGATTCTGTCTTTATCGGGATCTTTCCATTTGCTGGA 954
Query 1163 GAACGATGGTCAAAGAAGCAGGACGGGTGGTCTAAGCGTGTCCTTATCAAGTCCGGATGG 1222
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 955 GAACAATGGTCAAAGAAGCAGGACGGGAGGTCTAAGCGTGTCATTATCAAGTCCGGATGG 1014
Query 1223 TAATGTCCTAGGTGGTAGTGTAGCTGGTCTTCTGATAGCAGCATCACCTGTTCAGATTGT 1282
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1015 TAATGTCCTCGGTGGCAGTGTAGCTGGTCTTCTTATAGCAGCATCACCTGTTCAGATTGT 1074
Query 1283 TGTTGGGAGTTTCATACCAGACGGAGAAAAAGAACCAAAACAGCATGTGGGACAAATGGG 1342
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGTTGGGAGTTTCTTACCAGACGGAGAAAAAGAACCAAAACAGCATGTGGGACAAATGGG 1134
Query 1343 ACTATCGTCACCCACATTACCGCGTGTGGCCCCAACACAGGTGCTGATGACTCCGAGCAG 1402
||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1135 ACTGTCGTCACCCGTATTACCGCGTGTGGCCCCAACGCAGGTGCTGATGACTCCAAGTAG 1194
Query 1403 CCCGCAATCTCGAGGCACAATGAGTGAGTCATCTTGTGGAGGAGGACATGGAAGCCCTAT 1462
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCCACAATCTCGAGGCACAATGAGTGAGTCATCTTGTGGAGGAGGACATGGAAGCCCTAT 1254
Query 1463 TCATCAGAGCAC---AGGA--T--C--T-------T-A-CA-GC--TGGAAGTAGCCAAG 1501
|||||||||||| |||| | | | | | || || ||||||||||||||
Sbjct 1255 TCATCAGAGCACTGGAGGACCTTACAATAACACCATTAACATGCCCTGGAAGTAGCCAAG 1314
Query 1502 TGATCTGGGTCGGCTTAAAACCAACAACTTCCCGTTATTTGAGTGATGATTATTTCTATA 1561
||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1315 TGATCTGTGTCGGCTTAAAACCAACAACTTCCCGTTATTAGAGTGAT--TTATTTCTACA 1372
Query 1562 TTTGGTTTAGACTTTCTAGTTCTG 1585
||||||||||||||||||||||||
Sbjct 1373 TTTGGTTTAGACTTTCTAGTTCTG 1396
Score = 335 bits (181), Expect = 1e-90
Identities = 218/235 (93%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 1545 TGATGATTATTTCTATATTTGGTTTAGACTTTCTAGTTCTGTTCAGACAAAAGGAGTTTG 1604
||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TGATGGTTATTTCTACAGTTGGTTTAGACTTTCTAGTTCTGTTCAGACAAAAGGAGTTTG 1454
Query 1605 ATAACTTGACC----TATTTTGTGT-TTTGAGGTACTTTCAGAACCATAGGTGTTCAGAA 1659
|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1455 ATAAATTGACCGACCTATTTTGTGTGTTTGAGGTACTTTCAGAACCATAGGTGTTCAGAA 1514
Query 1660 ATTAGAATGTCCTGATTCATGTAGATCTTTTATTTTATGTTGAGGTACTTTCAGAACCAT 1719
|||||||||| ||| || | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1515 ATTAGAATGTTCTGTTTAAGGTAGATCTTTTATTTTATGTTGAGGTACTTTCGGAACCAT 1574
Query 1720 AAGTTGTTCAGAAATTAGAAAATCCTGTTTAATGTAGATCTTTTATTTTGTGTTT 1774
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 1575 AAGTTGTTCAGAAATTGGAATATCCTGATTAATGTAGATCTTTTATTTTGTGTTT 1629
Score = 287 bits (155), Expect = 3e-76
Identities = 219/247 (89%), Gaps = 16/247 (6%)
Strand=Plus/Plus
Query 14 AACCTTAATGCTTGATCCGCTTTTCTCCTAAATTTTTGTGTGAGAGAAGAGAGATCT--A 71
||||||||||| ||||||| ||| | ||||| ||||||| ||||| | |||||||| |
Sbjct 1 AACCTTAATGCGCGATCCGC-TTT-T-CTAAAGTTTTGTGAGAGAG-A-AGAGATCTAAA 55
Query 72 AAAATCCACAATTTTGTTCAAATCTTGGAGTTAAATGCTGAATTTTAGGCCTAGTTGCTT 131
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 56 AAAATCCACAATTTTGTTCAAATCTTGGAGTTAAATGCTGAATTTTAGGCCTTGTTGCTT 115
Query 132 AGATGTATGGCTTAAAGTTTCGAACTTTTCCTTGGATATGGTACAA-TCTTGTAGTTAAA 190
|||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 116 AGATTTATGGCTTAAAGTTTCAAACTTTTCATTGGATATGGTACAAATCTTGTAGTTAAA 175
Query 191 CGCTGA-T-GTGTCCCTCTTGGTCTTGGGCGTTGTTGCTTAGATTTATGGCTTAAAGTTT 248
| |||| | ||||||||| | | |||||||||||||| |||||||||| |||||||
Sbjct 176 CACTGAATTGTGTCCCTC--G-T---GGGCGTTGTTGCTTTGATTTATGGCCAAAAGTTT 229
Query 249 CAAACTT 255
|||||||
Sbjct 230 CAAACTT 236
Score = 122 bits (66), Expect = 8e-27
Identities = 122/146 (84%), Gaps = 16/146 (11%)
Strand=Plus/Plus
Query 216 GGCGTTGTTGCTTAGATTTATGGCTTAAAGTTTCAAACTTTTCCTTGGATATGGTACAA- 274
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 103 GGCCTTGTTGCTTAGATTTATGGCTTAAAGTTTCAAACTTTTCATTGGATATGGTACAAA 162
Query 275 TCTTGTTGTTGCTTAAGTTGAAACACTGAATTGTCTCTCT--TGGGCGTGTAGTTGCTTA 332
|||||| | ||| |||||||||||||| || || ||||||| | |||||||
Sbjct 163 TCTTGT--------A-GTT-AAACACTGAATTGTGTCCCTCGTGGGCGT-T-GTTGCTTT 210
Query 333 GATTTAGGGCTAAA-GTTTCAATCTT 357
|||||| ||| ||| ||||||| |||
Sbjct 211 GATTTATGGCCAAAAGTTTCAAACTT 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5