BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482315
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33670.1 | Symbols: MLO5, ATMLO5 | Seven transmembrane MLO f... 2494 0.0
> AT2G33670.1 | Symbols: MLO5, ATMLO5 | Seven transmembrane MLO
family protein | chr2:14245030-14247931 FORWARD LENGTH=1666
Length=1666
Score = 2494 bits (1350), Expect = 0.0
Identities = 1486/1551 (96%), Gaps = 12/1551 (1%)
Strand=Plus/Plus
Query 10 GGAGGAGGAGGTGGTAGCACTTCTGGAGAAGGTCCGAGAGAGCTCGATCAGACACCGACA 69
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 115 GGAGGAGGAGGTGGTAGCACTTCTGGAGAAGGTCCTAGAGAGCTCGATCAGACACCGACA 174
Query 70 TGGGCCGTCTCTACTGTTTGTGGCGTTATCATCTTAATCTCTATCGTTCTAGAGCTCATG 129
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 TGGGCCGTCTCCACTGTTTGTGGCGTTATCATCTTGATCTCTATCGTTCTAGAGCTCATG 234
Query 130 ATTCACAAAATCGGAGAGGTTTTCAC-GAAAAGAAGGAAGAAAGCTTTGTACGAAGCTCT 188
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 235 ATTCACAAAATCGGAGAGGTTTTCACTG-AAAGAAGGAAGAAAGCTTTGTACGAAGCGCT 293
Query 189 TCAAAAGATCAAGAACGAGCTTATGGTTTTGGGATTCATTTCTCTGTTATTAACATTTGG 248
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 294 TCAAAAGATCAAGAACGAGCTTATGGTTTTGGGATTCATTTCTTTGTTATTAACATTTGG 353
Query 249 ACAAAACTACATAGCAAGCTTGTGTGTGGCGACAAGATACGGCCATGCGATGTCCTTTTG 308
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 354 ACAAAACTACATAGCAAGTTTGTGTGTGGCGTCAAGATACGGCCATGCGATGTCCTTTTG 413
Query 309 TGGTCCGTACGATGGTCCAAGTGGTGAGTCTAAGAAGCCAAAGACTACCCACCACTTACA 368
|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 414 TGGTCCATACGATGGTCCAAGTGGTGAGTCTAAGAAGCCAAAGACTACCGAACACTTAGA 473
Query 369 ACGCCGTGTTTTGGCTGATGCCGCTCCAACTCAGTGCAAGAAGGGTTATGTGCCACTTAT 428
||| ||||||||||||||||| |||||| |||||||||||||||| ||||| || |||||
Sbjct 474 ACGTCGTGTTTTGGCTGATGCTGCTCCAGCTCAGTGCAAGAAGGGCTATGTACCGCTTAT 533
Query 429 ATCACTCAACGCGTTGCATCAAGTGCATATCTTCATCTTCTTCTTGGCTGTGTTTCATGT 488
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 534 ATCACTCAACGCGTTGCATCAAGTGCATATCTTCATCTTTTTCTTGGCTGTGTTTCATGT 593
Query 489 CATTTATAGTGCTATTACCATGATGCTTGGAAGAGCGAAGATTCGTGGATGGAAAGTTTG 548
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 594 CATTTATAGTGCTATTACCATGATGCTTGGACGAGCAAAGATTCGTGGATGGAAAGTTTG 653
Query 549 GGAGGAAGAAGTCATAAATGATCACGAAATGATGGATGATCCTTCAAGATTTAGGCTCAC 608
|||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 654 GGAGGAAGAAGTCATAAATGATCATGAAATGATGAATGACCCTTCAAGGTTTAGGCTCAC 713
Query 609 ACATGAGACATCATTTGTTAGAGAGCATGTCAATCCTTGGGCCAAAAATAGATTCTCCTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 ACATGAGACATCATTTGTTAGAGAGCATGTCAATCCTTGGGCCAAAAATAGATTCTCATT 773
Query 669 CTACGTTATGTGTTTCTTTCGTCAAATGCTGAGATCTGTCAGAAAATCTGATTATTTGAC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTACGTTATGTGTTTCTTTCGTCAAATGCTGAGATCTGTCAGAAAATCTGATTATTTGAC 833
Query 729 AATGCGTCATGGGTTCATAAGTGTCCATTTGGCACCCGGTATGAAGTTTAATTTCCAAAA 788
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 834 AATGCGTCATGGTTTCATAAGTGTCCATTTGGCACCGGGTATGAAGTTTAATTTCCAAAA 893
Query 789 ATACATCAAAAGATCATTGGAAGACGACTTCAAGGTAGTCGTGGGAATAAGTCCCGAGCT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATACATCAAAAGATCATTGGAAGACGACTTCAAGGTAGTCGTGGGAATAAGTCCCGAGCT 953
Query 849 ATGGGCCTTTGTAATGCTCTTTTTACTCTTTGATGTTCACGGATGGTATGTTACTGCTGT 908
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 954 ATGGGCCTTTGTAATGCTCTTTTTGCTCTTTGATGTTCACGGGTGGTATGTTACTGCTGT 1013
Query 909 GATCACCATGATTCCTCCAGTTTTGACATTAGCGATAGGAACCAAGCTTCAAGCCATCAT 968
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GATCACCATGATTCCTCCACTTTTGACATTAGCGATAGGAACCAAGCTTCAAGCCATCAT 1073
Query 969 ATCAGACATGGCGTTGGAGATTCAGGAGAGACACGCCGTGATACAAGGGATGCCACTTGT 1028
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CTCAGACATGGCGTTGGAAATTCAGGAGAGACACGCCGTGATACAAGGGATGCCACTTGT 1133
Query 1029 CAATGTCTCTGACCGACATTTCTGGTTAAGTCGTCCCGCCTTAGTCCTCCATATCATCCA 1088
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1134 CAATGTCTCTGATCGACATTTCTGGTTTAGTCGTCCCGCCTTAGTCCTCCATATCATCCA 1193
Query 1089 CTTCATTCTCTTCCAGAATGCTTTTGAGATCACTTACTTCTTCTGGATATGGTATGAGTT 1148
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1194 CTTCATTCTCTTCCAGAATGCTTTTGAGATCACCTACTTCTTCTGGATATGGTATGAGTT 1253
Query 1149 CGGGTTACGGTCCTGTTTTCATCACCATTTCGCCCTCATAATCATACGTGTTGCTCTCGG 1208
||||||||||||||||||||||||||||||||| || ||||||||| | |||||||| ||
Sbjct 1254 CGGGTTACGGTCCTGTTTTCATCACCATTTCGCGCTAATAATCATAAGGGTTGCTCTTGG 1313
Query 1209 AGTGGGAGTACAATTTCTCTGCAGTTACATCACACTTCCTCTTTACGCTCTC---A-T-- 1262
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1314 GGTGGGAGTACAATTTCTCTGCAGTTACATCACACTTCCTCTTTACGCTCTCGTGACTCA 1373
Query 1263 G--GG-ATCAACGATGAAGCGATCGGTGTTTGATGATCAAACGTCAAAGGCATTAAAGAA 1319
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GATGGGATCAACGATGAAGCGATCGGTGTTTGATGATCAAACGTCAAAGGCATTAAAGAA 1433
Query 1320 TTGGCATAAGAATGCAAAGAAAAAGAGCGAAACTTCAGGTCCAATGCAGTCTCCATTGCC 1379
||||||||| |||||||||||||||||||||||| | |||| || |||| ||||||||||
Sbjct 1434 TTGGCATAAAAATGCAAAGAAAAAGAGCGAAACTCCTGGTCAAACGCAGCCTCCATTGCC 1493
Query 1380 TAATCTCCGACCTAAAACCGGCGGCGATATTGAGTCTGCTTCTCCGGCCAATATCACGGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TAATCTCCGACCTAAAACCGGCGGCGATATTGAGTCTGCTTCTCCGGCCAATATCACGGC 1553
Query 1440 TAGTGTTGATGTTAAAGAAAGTGATCAATCTCAACCTCGAGACCTCTTAAGCGGTCCCTA 1499
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1554 TAGTGTTGATGTTAAAGAAAGTGATCAATCTCAATCTAGAGACCTCTTAAGCGGTCCCTA 1613
Query 1500 AAAAACCAAACCGGTCAAAGACACTACGTTCACTTAACCGGCTTATTCTAA 1550
||||||||||| |||||| |||| ||| ||||||||||||||||| |||||
Sbjct 1614 AAAAACCAAACGGGTCAA-GACATTACTTTCACTTAACCGGCTTACTCTAA 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5