BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482316
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2610 0.0
> AT2G33680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:14249608-14251791 FORWARD LENGTH=2184
Length=2184
Score = 2610 bits (1413), Expect = 0.0
Identities = 1563/1636 (96%), Gaps = 8/1636 (0%)
Strand=Plus/Plus
Query 510 GAAATACTTATACATGGTCTACTATGGTATCTGGTTATGCTACAAGAAGGACGTGTTGAG 569
|||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 545 GAAATACTTATACATGGTCTACTATGGTTTCTGGTTATGCTACAAG-AGGACGCGTTGAA 603
Query 570 GAGGCAATTAAAGTCTTCAATTTGTTTCTTAGAGGAGAAGGAGAAAGAAAGTGATAGTGA 629
||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||
Sbjct 604 GAGGCAATTAAAGTCTTCAATTTGTTTCTTAGA-GAGAAGGAGGAAGGAAGTGATAGTGA 662
Query 630 CTATGTCTTCACTGCGGTTCTTAGCTCGCTGGCTGCAACCGTATATGTAGGACTAGGCAG 689
|||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||
Sbjct 663 CTATGTCTTCACCGCGGTTCTCAGCTCGCTGGCTGCAACCATATACGTAGGACTAGGCAG 722
Query 690 GCAAATCCAAGGCATCACAGTTAAAAATGGGTTGCTTGGGTTTGTAGCTTTGAGTAATGC 749
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GCAAATCCATTGCATCACAATTAAAAATGGGTTGCTTGGGTTTGTAGCTTTGAGTAATGC 782
Query 750 GCTCGTTACAATGTATTCAAAGTGTGAGAGCTTGAATGAGGCATGCAAGATGTTTGACTC 809
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GCTTGTTACAATGTATTCAAAGTGTGAGAGCTTGAATGAGGCATGCAAGATGTTTGACTC 842
Query 810 GTCTGGTGACAGAAATTCAATTACATGGTCAGCAATGGTCACTGGTTATTCTCAGAATGG 869
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTCTGGTGACAGAAATTCGATTACATGGTCAGCAATGGTCACTGGTTATTCTCAGAATGG 902
Query 870 GGAATCACTTGAAGCAATAAAGCTTTTCTCGAGAATGTTTTCTGCTGGAATCAAGCCCAG 929
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 903 GGAATCACTTGAAGCAGTAAAGCTTTTCTCTAGAATGTTTTCTGCTGGAATCAAGCCCAG 962
Query 930 TGAATACACTATTGTTGGGGTTCTAAATGCATGCAGTGACATTTGCTATCTAGTAGAAGG 989
||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 963 TGAATACACGATTGTTGGGGTTCTTAATGCATGCAGTGACATTTGCTATCTAGAAGAAGG 1022
Query 990 GAAACAACTTCATTCTTTCTTGTTAAAGTTGGGATTTGAAAGACATTTATTTGCAACTAC 1049
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GAAGCAACTTCATTCTTTCTTGTTAAAGTTGGGATTTGAAAGACATTTATTTGCAACTAC 1082
Query 1050 TGCATTGGTTGACATGTATGCAAAAGCCGGTTGTCTAGCAGATGCCAGGAAAGGTTTTGA 1109
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 TGCTTTGGTTGACATGTATGCAAAAGCCGGTTGTCTAGCAGATGCCAGAAAAGGTTTTGA 1142
Query 1110 CTGCCTACAAGAACGTGATGTGGCGCTTTGGACATCGCTTATTAGCGGATATGTTCAAAA 1169
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1143 CTGCCTACAAGAACGTGATGTGGCGCTTTGGACATCGCTTATTAGCGGGTATGTTCAAAA 1202
Query 1170 CTCAGATAACGAAGAGGCTTTGATTCTGTACCGCAGAATGAAAACAGCAGGTATTATCCC 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CTCAGATAACGAAGAGGCTTTGATTCTGTACCGCAGAATGAAAACAGCAGGTATTATCCC 1262
Query 1230 AAACGACCCAACCATGGCAAGTGTTCTAAAAGCTTGCTCCTCTCTAGCTACCTTGGAGCT 1289
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1263 AAACGACCCAACCATGGCAAGTGTTCTAAAAGCTTGCTCTTCTCTAGCTACCTTGGAGCT 1322
Query 1290 CGGAAAGCAAGTACATGGCCACACAATCAAGCACGGGTTTGGGCTTGAAGTTCCAATTGG 1349
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1323 CGGAAAGCAAGTACACGGCCACACAATCAAGCATGGGTTTGGGCTTGAAGTTCCAATAGG 1382
Query 1350 AAGTGCACTTTCTACAATGTACACAAAGTGCGGGAGTTTAGAAGATGGGAACCTCGTCTT 1409
||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1383 AAGCGCACTTTCTACAATGTACTCAAAGTGTGGGAGTTTAGAAGATGGGAACCTCGTCTT 1442
Query 1410 TAGAAGAACTCCCAATAAAGATGTTGTGTCTTGGAACGCGATGATCTCAGGCTTGTCCCA 1469
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1443 TAGAAGAACTCCCAATAAAGATGTTGTGTCTTGGAACGCTATGATCTCAGGCTTGTCCCA 1502
Query 1470 TAACGGACAAGGAGATGAGGCTTTGGAACTGTTTGAGGAGATGTTAGCAGAAGGAACAGA 1529
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1503 TAATGGACAAGGAGATGAGGCTTTGGAACTGTTTGAGGAGATGTTAGCAGAAGGAATGGA 1562
Query 1530 ACCAGATGATGTCACTTTCGTGAACATTATATCAGCGTGCAGCCATAAAGGGTTTGTAGA 1589
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1563 ACCAGATGATGTCACTTTCGTGAACATTATATCAGCGTGTAGCCACAAAGGTTTTGTAGA 1622
Query 1590 GAGAGGCTGGTCTTATTTCCATATGATGTCTGATCAGTTCGGGCTTGATCCAAAAGTTGA 1649
||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 1623 GAGAGGCTGGTTTTATTTCAATATGATGTCAGATCAGATCGGGCTTGATCCAAAAGTTGA 1682
Query 1650 CCACTATGCTTGTATGGTTGATGTGCTGAGCCGTGCAGGACAGCTCAAAGAGACAAAAGA 1709
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1683 CCACTATGCTTGTATGGTTGATCTGCTGAGCCGTGCAGGACAGCTCAAAGAGGCAAAAGA 1742
Query 1710 ATTCATCGAATCAGCTAGTATTGATCACGGTTTATGCCTTTGGCGGATACTATTAAGCGC 1769
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 GTTCATCGAATCAGCTAATATTGATCACGGTTTATGCCTTTGGCGGATACTATTAAGCGC 1802
Query 1770 ATGTAAGAACCATGGGAATTGTGAGCTAGGAGTTTATGCAGGAGAGAAGCTCATGGCCCT 1829
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1803 ATGTAAGAACCATGGGAAATGTGAGCTAGGAGTTTACGCAGGAGAGAAGCTCATGGCCCT 1862
Query 1830 TGGATCTAGAGAATCATCAACGTATGTGCAACTGGCAGGCATTTACACGGCTTTAGGGCG 1889
|||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1863 TGGATCGAGAGAATCATCAACTTATGTGCAATTGTCAGGCATTTACACGGCTTTAGGGCG 1922
Query 1890 GATGAGAGATGTGGAACGGGTTTGGAAACTCATGAGAACAAACGGGGTGAGCAAAGAAGT 1949
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1923 GATGAGAGATGTGGAACGGGTTTGGAAACACATGAGAGCAAACGGGGTGAGCAAAGAAGT 1982
Query 1950 GGGTTGCAGTTGGATCGCGCTGAAGAATCAGTGGCATGTTTTTGTTGTGGGAGATACAAT 2009
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1983 GGGTTGCAGTTGGATCGAGCTGAAGAATCAGTACCATGTTTTTGTTGTGGGAGATACAAT 2042
Query 2010 GCATCCGATGATTGAGGAGACAAAGGATCTTG-TTAGTTTGGTTAGTAGACAGATGTTGG 2068
||||||||||||||| ||||| |||||| ||| || |||||||||||||||||||| | |
Sbjct 2043 GCATCCGATGATTGAAGAGACGAAGGAT-TTGGTTTGTTTGGTTAGTAGACAGATGATAG 2101
Query 2069 AAGAAGGATTCGTAACTTTGTTGGATTCTTCTTATGTCGAAGAAGAAGAA----CACAAT 2124
||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||
Sbjct 2102 AAGAAGGATTCGTAACTGTGTTGGATTCGTCTTTTGTCGAAGAAGAAGAAGGAACACAAT 2161
Query 2125 TATGTACTTCTTTCAT 2140
||| ||||||||||||
Sbjct 2162 TATCTACTTCTTTCAT 2177
Score = 743 bits (402), Expect = 0.0
Identities = 476/511 (93%), Gaps = 8/511 (2%)
Strand=Plus/Plus
Query 1 ATGTATCCAAGTACCTTTCAAACCGAAATCAACCCGTTCTCTCATACTTCCACGTTATTA 60
||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 1 ATGCATCCAAGTACCTTTCAAACAGAACTCAACCCG------CATACTTCCACGTTATTA 54
Query 61 AAAGCACTGACTCATCATTCACAGCATAGGAACCTCGTGGCTGGACGTGCAGTTCATGCA 120
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 55 AAAAAACTGACTCATCATTCACAGCAAAGGAACCTCGTGGCTGGACGTGCAGTTCATGGA 114
Query 121 CAGATCATCAGGACGGGTA-CATCAACATGCACCCAACATGCCAATGTCCTTGTCAACTT 179
||||||||||| ||||| | ||||||| |||| |||||||||||||||||||||||||||
Sbjct 115 CAGATCATCAGAACGGG-AGCATCAACCTGCATCCAACATGCCAATGTCCTTGTCAACTT 173
Query 180 TTACGCTAAATGTGGACAATTAGCCAAAGCCCACTCCATCTTCAACGCCATAATCTGCAA 239
||| || ||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 174 TTATGCAAAATGTGGAAAATTGGCCAAAGCCCACTCCATCTTTAACGCCATAATCTGCAA 233
Query 240 GGATGTTGTGTCCTGGAACAGTCTCATCACTGGCTATTCTCAGAACGGCGGTATCTCCAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 GGATGTTGTGTCCTGGAACAGTCTCATCACTGGCTATTCTCAGAACGGCGGTATCTCCAG 293
Query 300 CTCCCACACTGTTATGCAGCTGTTTCGGGAGATGAGAGCACAGGATATACTACCAAATGC 359
|||| |||||||||||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 294 CTCCTACACTGTTATGCAGCTGTTTCGTGAGATGAGAGCGCAAGATATACTGCCAAATGC 353
Query 360 TTATACTCTTGCCGGGATTTTTAAGGCTGAGTCGAGTCTTCAAAGTTGTACAGTTGGGAG 419
|||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 354 TTATACCCTTGCTGGGATTTTTAAGGCCGAGTCGAGTCTTCAAAGTTCTACAGTTGGGAG 413
Query 420 GCAGGCTCACGCACTTGTGGTCAAAATGTCAAGTTTTGGGGATATATATGTTGACACTTC 479
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 GCAGGCTCACGCGCTAGTGGTCAAAATGTCAAGTTTTGGGGATATATATGTTGATACTTC 473
Query 480 GTTGGTGGGCATGTACTGTAAAGCGGGCTTG 510
|||||||||||||||||||||||||||||||
Sbjct 474 GTTGGTGGGCATGTACTGTAAAGCGGGCTTG 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5