BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482317

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33690.1 | Symbols:  | Late embryogenesis abundant protein, ...   464    2e-130


> AT2G33690.1 | Symbols:  | Late embryogenesis abundant protein, 
group 6 | chr2:14252199-14252588 FORWARD LENGTH=390
Length=390

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 348/391 (89%), Gaps = 21/391 (5%)
 Strand=Plus/Plus

Query  5    TGTCGAAGAGAGAAGAGAAACAAGAATTGCCACTAGAAACAAGTCCGTACACAAAGTATG  64
            |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct  2    TGTCGAAGAGTGAAGAGAAACAAGAGTTGCCACTAGAAACAAGTCCGTATACAAAGTACG  61

Query  65   AGGATATAGAAGATTACAAGAAGAATGCTTATGGAACTTCCGGTCACCAAGACGTTAAGC  124
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  62   AGGATATAGAGGATTACAAGAAGAATGCTTATGGAACTTCCGGTCACCAGGACGTTAAGC  121

Query  125  CTGGCCAAGGCGGAGGCACAACCGACGCACCGACCCTCTCCGGT-AGTGGTGCTCCCTCT  183
            ||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||||||| 
Sbjct  122  CTGGCCACGGCGGCGGCACAACCGACGCACCGACCCCCTCCGGTGA-TGCTGCTCCCTCC  180

Query  184  GCCATAGATTCCGCTAACCAAAAAGCTAAGAAGTGAA----T-A-----T-TTCTCTCTT  232
            |||||||||||||||||||||||||||||||||||||    | |     | || ||||||
Sbjct  181  GCCATAGATTCCGCTAACCAAAAAGCTAAGAAGTGAACCACTCACAAAATGTT-TCTCTT  239

Query  233  GCTTCTGGTTT-GATTACTCTCCAATGTGATTTATTTAACGCTTTGTGATAATTGACATG  291
            | ||||| ||| | |||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct  240  GATTCTGTTTTAG-TTACTCTCCAATGTGATTCATTTGACGCATTGTGATAATTGACATG  298

Query  292  tttttgtttttttttCCTCCTTTTATCCATTGTTATGATCCAATCTAA-ATCAATAAATA  350
            ||||||||||||   | ||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct  299  TTTTTGTTTTTT---C-TCCTTTTCTCCATTGATATGATCCAATCTAAGATCAATAAATA  354

Query  351  GATGTTAAGTCTAAGGGATTTTGACCGTCTT  381
            ||||| ||||| ||||||||||| || ||||
Sbjct  355  GATGTCAAGTCGAAGGGATTTTGGCCATCTT  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5