BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482319
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33707.1 | Symbols: | Encodes a defensin-like (DEFL) family... 272 9e-73
> AT2G33707.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr2:14257019-14257258 REVERSE LENGTH=240
Length=240
Score = 272 bits (147), Expect = 9e-73
Identities = 196/217 (90%), Gaps = 14/217 (6%)
Strand=Plus/Plus
Query 4 ACGATGACAGAAAGCAAAAAATGTCACAAAGACTCAGATTGCAAACACAAAATACCATGT 63
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 37 ACGATGACAGAAAGCAAAAGATGTCACAAAGACTCAGATTGCAAAAACAAAGTACCATGT 96
Query 64 GCAATTCCTGTTGCCTGTCTATATGGCGGTTGCGTTTGTACATTAATGGCATTTGCAAAT 123
|||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 97 GCAATTCCTGTTGCCTGTCTATATGGCGGTTGCGTTTGTACATTAA----A---GCA--- 146
Query 124 CGGTCTTTCTCTGCTTGTAAACTTATGTGTGCACAGCTGGGAAAAAACACTATAAGCCAT 183
| |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 147 -G-TCTTTCTCTGCTTGTAAACTTATGTGTGCACAGCAGGGAAAAAACACTATAAACCGT 204
Query 184 TTTGATTCT-AGTCATTGTGTTTGCGGCGATAAGTAA 219
||||||||| | ||||||||||||||||| |||||||
Sbjct 205 TTTGATTCTGA-TCATTGTGTTTGCGGCGTTAAGTAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5