BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482320
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33710.2 | Symbols: | Integrase-type DNA-binding superfamil... 1062 0.0
AT4G11140.1 | Symbols: CRF1 | cytokinin response factor 1 | chr... 76.8 5e-13
> AT2G33710.2 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:14258809-14260739 REVERSE LENGTH=939
Length=939
Score = 1062 bits (575), Expect = 0.0
Identities = 682/732 (93%), Gaps = 14/732 (2%)
Strand=Plus/Plus
Query 1 GCTGTTTCTTTGGCTTGTACCCAAACCCATCTTTGACTTCAAAAATATAACAAAAATAAT 60
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 7 GCTGGTTCTTTGGCTTGTACCCAAACCCATCTTTGACTTCAAAAATAAAATAAAAATAAT 66
Query 61 CATAATTGATATCATCGGATAATGCATAGTGGGAAGAGACCTCTTTCACCAGAATCAATG 120
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 67 CATAATTGACATCATCGGATAATGCATAGCGGGAAGAGACCTCTATCACCAGAATCAATG 126
Query 121 GCCGGaaaaaaagaagagaaaaaagaGTTGTGTTGTTGCTCAACTTTGTCGGAATCTGAT 180
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GCCGGAAATAGAGAAGAGAAAAAAGAGTTGTGTTGTTGCTCAACTTTGTCGGAATCTGAT 186
Query 181 GTGTCTGCTTTTGTCTCTGAACTCACTGAACAACCCACCCCACCATCCATGGATGATCAA 240
||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||||||||
Sbjct 187 GTGTCTGATTTTGTCTCTGAACTCACTGGTCAACCCATCCCATCATCCATTGATGATCAA 246
Query 241 TCTAT-GCCGCTTACTCTTCAAGAACAAAGTAACTCGAGGCAACGAAACTACAGAGGCGT 299
||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 247 TCT-TCGTCGCTTACTCTTCAAGAAAAAAGTAACTCGAGGCAACGAAACTACAGAGGCGT 305
Query 300 GAGGCAAAGACCGTGGGGAAAATGGGCGGCCGAGATTCGTGACCCGAATAAGGCAGCTCG 359
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 306 GAGGCAAAGACCGTGGGGAAAATGGGCGGCTGAGATTCGTGACCCGAACAAGGCAGCTCG 365
Query 360 TGTGTGGCTTGGGACGTTCGACACTGCCGAAGAAGCTGCCTTAGCATATGATAAAGCTGC 419
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 366 TGTGTGGCTTGGGACGTTCGACACTGCAGAAGAAGCCGCCTTAGCGTATGATAAAGCTGC 425
Query 420 ATTTGAGTTTAGAGGTCACAAGGCCAAGCTTAACTTCCCCGAGCACATTCGTGTCAACCC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 426 ATTTGAGTTTAGAGGTCACAAGGCCAAGCTTAACTTCCCCGAGCATATTCGTGTCAACCC 485
Query 480 TACTCAACTCTATCCATCAACCGCTACTTCCCATGATCGCATTATCGTGACACCACCTAG 539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TACTCAACTCTATCCATCGCCCGCTACTTCCCATGATCGCATTATCGTGACACCACCTAG 545
Query 540 ACCACCTCCAACAATTGCTCCTGACATACTTCTTGATCAATATGGCCACTTTCAATCTCC 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 TCCACCTCCACCAATTGCTCCTGACATACTTCTTGATCAATATGGCCACTTTCAATCTCG 605
Query 600 AAATAGTGATTC-AGGTGCCAACTTATCCATGAATATG-TCGTCTTCTTCGTCGTCGTCA 657
|| ||||||||| || ||||||||| |||||||||||| | |||||||||||| | |||
Sbjct 606 AAGTAGTGATTCCAG-TGCCAACTTGTCCATGAATATGCT-GTCTTCTTCGTC-T--TCA 660
Query 658 TTTTTGAATCATCAAGAACATA-GACCAAATTTGGAGGATGATGAAAACGTGAAGAAC-A 715
| |||||||||||||| | || |||||||||||||||||| ||||||||| | || | |
Sbjct 661 TCTTTGAATCATCAAGGGC-TAAGACCAAATTTGGAGGATGGTGAAAACGTCATGA-CGA 718
Query 716 TTACTATCCACA 727
|| ||||||||
Sbjct 719 CTA-TATCCACA 729
Score = 148 bits (80), Expect = 1e-34
Identities = 115/130 (88%), Gaps = 10/130 (8%)
Strand=Plus/Plus
Query 942 GTCGGATCAGGTTGGGTCGAGTATATCAGGTAGATAAAAG-T-GT----G-TGCTTTATG 994
|||||||||||||||||||||||||||||||||| ||||| | || | |||||||||
Sbjct 805 GTCGGATCAGGTTGGGTCGAGTATATCAGGTAGAAAAAAGCTCGTACATGGTGCTTTATG 864
Query 995 TCTTTCCACTCAGAAGTATAGCTTGCTAGTTATCTCCTTTTGTATCACGTATGAAAGAGA 1054
||||||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||
Sbjct 865 TCTTTCCACTCCGAAGTA--GCTTGCTAGTT-TATCCTTTTGTATCACGTACGAAAGAGA 921
Query 1055 TTaaaaaaaa 1064
| ||||||||
Sbjct 922 TAAAAAAAAA 931
> AT4G11140.1 | Symbols: CRF1 | cytokinin response factor 1 | chr4:6794776-6795793
REVERSE LENGTH=1018
Length=1018
Score = 76.8 bits (41), Expect = 5e-13
Identities = 128/168 (76%), Gaps = 14/168 (8%)
Strand=Plus/Plus
Query 298 GTGAGGCAAAGACCGTGGGGAAAATGGGCGGCCGAGATTCGTGACCCGAATA-AGGCAGC 356
|||||||||||||||||||||||||||||||| |||||| | || |||| || | | |
Sbjct 268 GTGAGGCAAAGACCGTGGGGAAAATGGGCGGCGGAGATTAGAGATCCGAGTAGACGT-GT 326
Query 357 TCGTGTGTGGCTTGGG-ACGTTCGACACTGCCGAAGAAGCTGCC-TTAGCATATGATAAA 414
| | || ||| || || || || ||||| || || ||||||||| || | || |||||
Sbjct 327 TAGGGTTTGG-TTAGGTACTTTTGACACGGCGGAGGAAGCTGCCATT-GTTTACGATAAC 384
Query 415 GCTGC-ATTTGAGTTTA-GAGGTCAC-AAGGCCA-AGCTTAACTTCCC 458
|| || ||| || | | | |||| | || || | |||||||||||||
Sbjct 385 GCAGCTATTC-AGCT-ACGTGGTC-CTAACGC-AGAGCTTAACTTCCC 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5