BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482322
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33735.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 859 0.0
> AT2G33735.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr2:14268269-14269441 REVERSE LENGTH=670
Length=670
Score = 859 bits (465), Expect = 0.0
Identities = 596/655 (91%), Gaps = 26/655 (4%)
Strand=Plus/Plus
Query 1 AAATTGTGAATTTGAGGAAGCTTGAAATCGTTTGTTCGCAGTAGAGAGAATGTGGTGTTC 60
|||| || |||||||||||||||| ||||||||||| || | | |||||||||||||||
Sbjct 1 AAATCGTAAATTTGAGGAAGCTTGGAATCGTTTGTTTGCTCT-G-GAGAATGTGGTGTTC 58
Query 61 CGATTGGGGAGACGGCCATGGCTTCGATTTTTTCGATTTCGAGAATTACAAGGATCACTA 120
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 59 CGATTGGGGAGACAGCCATGGCTTCGATTTTTTCGATTTCGAGGATTACAAGGATCACTA 118
Query 121 TAAAGTTCTTGAATTGAACTGTGACGCTTCTGATGATGAAATTCGTTCCAGCTTTATCCG 180
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 TAAAGTTCTGGAATTGAACTGTGACGCTTCTGATGATGAGATTCGTTCCAGCTTTATCCG 178
Query 181 TCTTGCACTGAAATGGCATCCGGATAAATTTAAAGAAGAGGATTCTGCTACGTCTAGGTT 240
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 179 TCTTGCTCTGAAATGGCATCCGGACAAATTTAAAGAAGAGGATTCTGCTACGTCTAGGTT 238
Query 241 TCAAGAAATCAACGAGGCTTATCAAGTGTTGAGCGACCCAATTACAAGGCAGGAGTACGA 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 TCAAGAAATCAACGAGGCTTATCAAGTGTTGAGCGACCCAATTGCAAGGCAGGAGTACGA 298
Query 301 CAAGAAAAGGATGCGTCGTATCTATGAGAACAACATGGAACTATTGAATGAGTACAAGGA 360
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 299 TAAGAAAAGGATGCGTCGTATCTATGAGCACAACACGGAACTATTGAATGAGTACAAGGA 358
Query 361 GCTCATATTGACTTGCAATGGCCTTGGGATGAAGCATTATCTTTGGTAATTGCTAAACTA 420
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 359 GCTCATATTGACTTGCAATGGCCTTGGGGTGAAGCATTATCTTTGGTAATTGCTTAACTA 418
Query 421 AGATTAGGTGATATGTATAGCTTGTATGATGGATTAGCAT-TT-AGCAGGGTTGAATTTA 478
|||||||||||||||||||| || || |||| |||||||| || ||||||||||| ||||
Sbjct 419 AGATTAGGTGATATGTATAGATTATACGATGAATTAGCATATTTAGCAGGGTTGAGTTTA 478
Query 479 GGGACATTAGCATTTAAGCAGGGTTGTGTTTTGAGTGGATAAGAGCATCAATTAGCATC- 537
|| |||| ||||||||||||||||| ||||||||| | | |||||||||| | |
Sbjct 479 GGAACATCAGCATTTAAGCAGGGTTATGTTTTGAG---A---G--CATCAATTAGAA-CG 529
Query 538 AATCAGGTTTTTGTTTCTCTGCTTCCACAAAAACCATTTTGTTTGTCTTCCT-AGCAATC 596
||||||||||| ||||||||||||||||||||| |||||||| |||| ||| ||||| |
Sbjct 530 AATCAGGTTTTAGTTTCTCTGCTTCCACAAAAAACATTTTGTC-GTCT-CCTTAGCAACC 587
Query 597 ATTATATCAGTTT-CTA----A----AACATTGATGTCGAAGATGATCGGTTTCG 642
||||||||||||| | | | |||||||||||||||||| ||||||||||
Sbjct 588 ATTATATCAGTTTTCAACTTTATCTGAACATTGATGTCGAAGATAATCGGTTTCG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5