BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482330
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33780.1 | Symbols: | VQ motif-containing protein | chr2:14... 691 0.0
> AT2G33780.1 | Symbols: | VQ motif-containing protein | chr2:14291024-14291806
REVERSE LENGTH=783
Length=783
Score = 691 bits (374), Expect = 0.0
Identities = 570/659 (86%), Gaps = 35/659 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAATTCACCAAGATACAAAGATGACGCAAAGAACTTGCTTCCTTCACCAAGCAGC 60
|||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 76 ATGGAGAAATCACCAAGATACAGAGATAAAGCAAAGAACTTGCTTCCTTCACCAAGCAGC 135
Query 61 TGCACCACTACTCCGACCAGACT-CTTTAGATCCACCAACATG-ATTGACACCACTTTCA 118
||||||||||| ||||||||| | | ||| | || | |||| || || ||||||||||
Sbjct 136 TGCACCACTACACCGACCAGA-TACGTTAAAG--ACGA-CATGTAT-GAAACCACTTTCA 190
Query 119 TCCGAACCGATCCTTCTTCCTTCAAACAAGTCGTCCAACTGCTCACCGGAATCTCCAAGA 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 191 TCCGAACCGATCCTTCTTCCTTCAAGCAAGTCGTCCAACTGCTCACCGGAATCCCCAAGA 250
Query 179 CCCCGCCCCACCAACCCGACCCGAGATTTTCTTCCTTT-CACTCTATCCCTCCGATCAAA 237
|||| ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 251 ACCCGACCCACCAACCCGACCCGAGATTTCCT-CCTTTTCACTCAATCCCTCCGATCAAA 309
Query 238 TCCGT-ACCCAACAAGAAACAAGCTTCTTCCTTCCGCCTCTACGAACGTCGCGATTCGAT 296
|||| ||| |||||||||||| |||| |||||||| |||| |||||||||| | |||||
Sbjct 310 GCCGTGACC-AACAAGAAACAATCTTCGTCCTTCCGACTCTCCGAACGTCGCAACTCGAT 368
Query 297 GAAGCACTATCTCAAGATCAACCCGACC-AGTTCCGGGTTACCTGAGGTTC-C-CTCCCC 353
|||||| |||||||| |||||||||||| | ||||||| ||| ||| ||| | |||||
Sbjct 369 GAAGCATTATCTCAACATCAACCCGACCCA-TTCCGGGCCACCCGAGATTCTCACTCCCA 427
Query 354 CGGCATCTTGGATTTTCCGGCTCTGGCTCTCAGCCCTGACACTCCTCTCATGTCTGATCC 413
| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 428 C--CATCTTGAATTTTCCGGCTCTCGATCTCAGCCCTGACACTCCTCTCATGTCTGATCC 485
Query 414 GTTTCATCGATCCGGA-TCTCTGAGTCAGACTCAGAGCCCTAGTGATCCGAAACCGAGCT 472
|||| ||||| |||| ||| | | || |||||||||||||||| ||||||||||||
Sbjct 486 GTTTTATCGA-CCGGGGTCTTT---T-AG--TCAGAGCCCTAGTGATTCGAAACCGAGCT 538
Query 473 CCGATGATGAAGAAGAGAGAGCGATCAAGGAGAAAGGGTTCTATTTGCACCCATCACCGT 532
||||||||| |||| ||| ||||||||||||||||||| ||||||| ||| |||||||
Sbjct 539 TCGATGATGACCAAGAAAGATCGATCAAGGAGAAAGGGTTTTATTTGCGCCCGTCACCGT 598
Query 533 CGACAACTCCGAGGAATACGGAGCCCCGACTTCTCACTCTCTTTCCGGTGACTTCGACTC 592
|||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||| ||
Sbjct 599 CGACAACTCCGAGGGATACGGAGCCTCGACTTCTCTCTCTCTTTCCGATGACTCCGATTC 658
Query 593 ACTTGCCG-C-CAT-CACCTCATGATCA---A-C--CC-TAGTTTTGCCTTTGTTTTAT 641
||| |||| | | | ||||||||||||| | | || ||||||||| ||||||||||
Sbjct 659 ACTCGCCGGCGCCTTCACCTCATGATCATTGATCAACCCTAGTTTTGCTTTTGTTTTAT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5