BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482331
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33790.1 | Symbols: ATAGP30, AGP30 | arabinogalactan protein... 1038 0.0
> AT2G33790.1 | Symbols: ATAGP30, AGP30 | arabinogalactan protein
30 | chr2:14293561-14295271 REVERSE LENGTH=1055
Length=1055
Score = 1038 bits (562), Expect = 0.0
Identities = 686/745 (92%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 1 AAAAACAAAAGAATAAAGATGGGAATCATTGGTAAGTGTGTTTCTCTAACTCTCTTAGCA 60
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 17 AAAAACAAAAGAACAAAGATGGGAATCATTGGTAAGAGTGTTTCTCTAACTCTCTTTGCA 76
Query 61 CTTTTATGCTTCACTTCCTCTGTTTTCACCTTAGGAGTGAATCAACCTGGTTCATCAGAT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CTTTTGTGCTTCACTTCCTCTGTTTTCACCTTAGGAGTGAATCAACCTGGTTCATCAGAT 136
Query 121 CCCTTCCATAGCCATCCCCATCACCTTCCCATACCTCCCATCAAACTACCAAAACTCCCA 180
||||||||||||| |||||| ||||||||| ||||||| ||||||||||||| || |||
Sbjct 137 CCCTTCCATAGCCTTCCCCAACACCTTCCCCTACCTCCAATCAAACTACCAACTCTTCCA 196
Query 181 CCGGCCAAAGCTCCCATCAAACTACCAGTCTACCCACCAGCCAAAGCTCCGATCAAACTA 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 197 CCGGCCAAAGCTCCCATCAAACTACCAGCCTACCCACCAGCCAAAGCTCCGATCAAGCTA 256
Query 241 CCAACTCTCCCACCAGCCAAAGCTCCGATTAAGTTACCAACTCTCCCACCGATCAAACCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CCAACTCTCCCACCAGCCAAAGCTCCGATTAAGTTACCAACTCTCCCACCGATCAAACCT 316
Query 301 CCAGTTCTCCCACCAGTTTACCCTCCTAAGTACAACAAGACCCTAGTGGCCGTTCGAGGT 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 317 CCTGTTCTCCCACCAGTTTACCCTCCTAAGTACAACAAGACCCTAGTGGCAGTTAGAGGT 376
Query 361 GTGGTCTACTGCAAAGCCTGCAAGTATGCGGGCGTCAACAACATC-AA------A--CCC 411
||||||||||||||||| |||||||| ||||||||||||||| || || | |||
Sbjct 377 GTGGTCTACTGCAAAGCTTGCAAGTACGCGGGCGTCAACAACGTCCAAGGCGCTAAACCC 436
Query 412 GTTAAAGATGCGGTGGTGAGACTTGTGTGCAAGAACAACAAGAACCCAGTATCGGAGACA 471
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 437 GTTAAAGATGCGGTGGTGAGACTTGTGTGCAAGAACAAGAAGAACTCAATATCGGAGACA 496
Query 472 AAGACGGACACGAAGGGATACTTCATGCTCTTGGCCCCTAAGACGGTGACCAACTACGAT 531
|||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 497 AAGACGGACAAGAACGGATACTTCATGCTCCTGGCCCCTAAGACGGTGACCAACTACGAT 556
Query 532 ATCAAAAATTGCCGAGCTTTCCTCGTGAAGTCGCCGGACGCCAAATGCAGCAAAGTGTCA 591
|||||| ||| |||||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct 557 ATCAAAGGTTGTCGAGCTTTCCTCGTGAAGTCTCCAGACACCAAGTGCAGCAAAGTGTCG 616
Query 592 ACGTTCAATGGTGGATACAAGGGCTCCGTTCTAAAGCCGGTCTTGAAACCAGGATTTTCC 651
| || | | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TCACTCCACGATGGAGGCAAGGGCTCCGTTCTAAAGCCGGTCTTGAAACCAGGATTTTCC 676
Query 652 TCAGTC-ATCATCAAAAAGTTCAAGTACGGTGTTTACAACGTTGGTCCATTCGCATTCGA 710
|| | | ||||| | | |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 677 TC-GACCATCATGAGATGGTTCAAGTACAGTGTGTACAACGTTGGTCCATTCGCATTCGA 735
Query 711 ACCTACCTGCCCCAAATGAGATGGT 735
|||||||||||||||||||||||||
Sbjct 736 ACCTACCTGCCCCAAATGAGATGGT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45863776211
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5