BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482332
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein |... 1779 0.0
> AT2G33800.1 | Symbols: | Ribosomal protein S5 family protein
| chr2:14300772-14302430 REVERSE LENGTH=1143
Length=1143
Score = 1779 bits (963), Expect = 0.0
Identities = 1084/1141 (95%), Gaps = 13/1141 (1%)
Strand=Plus/Plus
Query 1 TCTGGTGCTGGATAAGCCTTTTGCTTCGTTCTCACTTCCTTCCTCATCC-AAAAAG--CC 57
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 10 TCTGGTGCTGGATAAGCCTTTTGCTTCATTCTCACTTCCTTCCTCATCCAAAAAAGCTCC 69
Query 58 TCCATTTTCAATGGCGACAGCATCAGctctctcttcactctcttctctctcactccacac 117
|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 70 TCCA-TTTCAATGGCGACAGCATCAGCTCTCTCATCACTCTCTTCACTCTCACTCCACAC 128
Query 118 ccgaaccacctcttctctcatctcctcctcctccacaaaacccatcgtctccttctcctc 177
||| | |||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 129 CCG-A--ACCTCTTCTCTCATCTCCTCTTCCTCCACAAAATCCATCGTCTCTTTCTCCTC 185
Query 178 cttcctcAACCGCCGCGTCTCATCTCTCACTCTCGTCAAAGCCTCATCGAACGAAACCGA 237
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 186 CTTCCTCAACCGCCGCTTCTCATCTCTCACTCTCGTCAAAGCCTCATCGACCGATACCGA 245
Query 238 AACTTTCTTCTTCGAAGACGAAACCCCAGAAATAACCGCCAATGTCGTCTTCGACCCACC 297
||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 246 AACCATCTTCTTCGAAGACGAAACACCAGAAATAACCGCAAATGTCGTCTTCGACCCACC 305
Query 298 AGTTGCTCCCGAAGGATTCGTCGCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 357
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 306 AATTGCTCCCGAAGGATTCGTCTCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 365
Query 358 GGAAGAGATCGCGACGGCTTTTGAAGAGCTCTATGGTCCTGCGTATAGTGGTGAGAGTAT 417
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 GGAAGAGATCGCTACCGCTTTTGAAGAGCTCTATGGACCTGCGTATAGTGGTGAGAGTAT 425
Query 418 GCTTGGGAAAGACATTTATGTGATGGATTCGAAGCATAAGAAGAGTTCAGGTATTGGTGG 477
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 426 GCTTGGGAAAGATATTTATGTGATGGACTCAAAGCATAAGAAGAGTTCAGGTATTGGTGG 485
Query 478 GAAGCTGAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 537
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GAAGCCAAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 545
Query 538 AGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAAGTTTAGAGCTATTGTTGTTGTTGG 597
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 546 AGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAAGTTTAGAGCTATCGTTGTTGTTGG 605
Query 598 TGATAAGCAGGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 657
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 665
Query 658 TCAGAAATCTGCCATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTACTC 717
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 666 TCAGAAATCTGCTATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTATTC 725
Query 718 TACTTTCCCCCACAGATCGGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCGGC 777
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 726 TACTTTCCCTCACAGATCAGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGC 785
Query 778 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTCAGGATCGTGCTAGAGATGGCAGG 837
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 786 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTTAGGATTGTGCTAGAGATGGCAGG 845
Query 838 AGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAACAATGCTCTCAACAATGCGAGAGC 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 846 AGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAACAATGCTCTCAACAATGCGAGAGC 905
Query 898 CACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCGCGATGTTGCTCAAGAGCGTGGAAT 957
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 906 CACTCTTGCAGCAGTACAACAGATGAGACAGTTCCGCGATGTTGCACAAGAGCGTGGAAT 965
Query 958 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1025
Query 1018 TGTTGAGATT-CTTGTAAAATTATGTAATTCATGAGAAAAATATGTTTATTTTGAAATAG 1076
|||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 1026 TGTTGAGATTTCTTGTAA--TGATGTAATTCATGAGAAAA-TATGTTTATTTTGAAATAG 1082
Query 1077 CAAATCCTTTCTTCTTCCACAAAAGTTC-CAATTGACCAATTCTATTACAGAATGCTATA 1135
|||||||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||
Sbjct 1083 TAAATCCTTTCTTCTCCCATAAAAGTTCACA-TTGACCGATTCTATTTCAGAATGCTATA 1141
Query 1136 G 1136
|
Sbjct 1142 G 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5