BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482334
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33810.1 | Symbols: SPL3 | squamosa promoter binding protein... 1369 0.0
AT2G33815.1 | Symbols: | other RNA | chr2:14305008-14306053 RE... 1275 0.0
> AT2G33810.1 | Symbols: SPL3 | squamosa promoter binding protein-like
3 | chr2:14305001-14306072 FORWARD LENGTH=981
Length=981
Score = 1369 bits (741), Expect = 0.0
Identities = 869/928 (94%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 124
Query 101 AGAGCACTAAAGCTTGTTCGTACttttttttACAGAACATGCTAATAATTTTTATACCTT 160
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 125 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 184
Query 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 244
Query 221 TGGGGCTCCTTTATAtctcttccaatgtttacttgtacttcctcttcgtcttcttctctt 280
||||||||||||||||||||||||||| |||||| ||| | || | ||||||||||||
Sbjct 245 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTAC-T--TC--C-TCTTCTTCTCTT 298
Query 281 cttgttccctctttcATGTgagagagagagagagTTGAAATTTGCAGATGAGTATGAGAA 340
|||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 299 CTTGTTCCATCTTTCATGT----GAGAGAGAGAGTTGAATTTTGCAGATGAGTATGAGAA 354
Query 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGgaagagg-ag--gacg 397
|||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || |
Sbjct 355 GAAGCAAAGCGGAAGGGAAGAGGAGCTTACGAGAACTGAGTGAGGAAGAGGAAGAAGAAG 414
Query 398 aagaaacagaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 457
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAGAAACTGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 474
Query 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 534
Query 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 535 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 594
Query 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 TTCGGATCTCTGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGCGCTCA 654
Query 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 714
Query 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757
||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 715 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 774
Query 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 834
Query 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874
||| || ||| |||| | |||||||||| |||||||||||||||||||||||| |||||
Sbjct 835 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 894
Query 875 GATTAAATAAATGCATTAAGACTT-GATAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931
| ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || |
Sbjct 895 GGTTAAATAAATGCATTGAGACTTAG-TAAATGCTTGAAGAAATTATGTGTAATAACTCT 953
Query 932 TTAAACTTGGAAAATGTTATTTCAAGCC 959
||||||||| |||||||||||||||||
Sbjct 954 TTAAACTTGTCAAATGTTATTTCAAGCC 981
> AT2G33815.1 | Symbols: | other RNA | chr2:14305008-14306053
REVERSE LENGTH=951
Length=951
Score = 1275 bits (690), Expect = 0.0
Identities = 840/909 (92%), Gaps = 24/909 (3%)
Strand=Plus/Minus
Query 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 894 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 835
Query 101 AGAGCACTAAAGCTTGTTCGTACttttttttACAGAACATGCTAATAATTTTTATACCTT 160
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 834 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 775
Query 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 715
Query 221 TGGGGCTCCTTTATAtctcttccaatgtttacttgtacttcctcttcgtcttcttctctt 280
||||||||||||||||||||||||||| |||||| |||||||||||| | | || || |
Sbjct 714 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTACTTCCTCTTC-T-T-CT-CT-T- 661
Query 281 cttgttccctctttcATGTgagagagagagagagTTGAAATTTGCAGATGAGTATGAGAA 340
|||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 660 CTTGTTCCATCTTTCATGTGAGAGAGAGAG----TTGAATTTTGCAGATGAGTATGAGAA 605
Query 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGgaagagga-g--gacg 397
|||||||||||||||| |||||||| |||| |||| |||||||||||||||| | || |
Sbjct 604 GAAGCAAAGCGGAAGGGAAGAGGAGCTTACGAGAACTGAGTGAGGAAGAGGAAGAAGAAG 545
Query 398 aagaaacagaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 457
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AAGAAACTGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 485
Query 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 425
Query 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 424 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 365
Query 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637
||||||||| |||||||||||||||||||| | | |||||||||| |||||
Sbjct 364 TTCGGATCTCTGGTCTTCACCAACGTTTCTTTTGTTTTT--A--AGGTTTCACGCGCTCA 309
Query 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 249
Query 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757
||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 248 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 189
Query 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 129
Query 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874
||| || ||| |||| | |||||||||| |||||||||||||||||||||||| |||||
Sbjct 128 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 69
Query 875 GATTAAATAAATGCATTAAGACTT-GATAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931
| ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || |
Sbjct 68 GGTTAAATAAATGCATTGAGACTTAG-TAAATGCTTGAAGAAATTATGTGTAATAACTCT 10
Query 932 TTAAACTTG 940
|||||||||
Sbjct 9 TTAAACTTG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5