BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482337
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33830.2 | Symbols: | Dormancy/auxin associated family prot... 765 0.0
> AT2G33830.2 | Symbols: | Dormancy/auxin associated family protein
| chr2:14309484-14310351 REVERSE LENGTH=676
Length=676
Score = 765 bits (414), Expect = 0.0
Identities = 560/625 (90%), Gaps = 32/625 (5%)
Strand=Plus/Plus
Query 1 TACTTCACACTTGACACAATTCTATCCAAAATCAACCCCAAGCAATACAGAAGaaaaaaa 60
||||||||||||||||||||||||||||||||||| ||| | || | | |||||| |||
Sbjct 12 TACTTCACACTTGACACAATTCTATCCAAAATCAA-CCC-A--AA-A-A-AAGAAAGAAA 64
Query 61 GATGTGGGATGAAACTGTAGCCGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTCCGCAA 120
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 65 TATGTGGGATGAAACTGTAGCCGGACCTAAACCGGAGCATGGCCTTGGCCGCCTCCGCAA 124
Query 121 TAATATCACCGCCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGCAAAAC 180
||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 125 TAAGATCACCACCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGTAAAAC 184
Query 181 TGTGGCGGCAGTTG-CGGGAAGTCCCGGGACTCCGACGACACCAGGATCGGCGCGTAAGG 239
||||||||| || | |||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct 185 TGTGGCGGCGGTGGCCGGG-AGTCCTGGAACTCCGACGACGCCAGGATCGGCGCGTAAGG 243
Query 240 AGAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACCAGAGGAATGGGAA 299
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 244 AAAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACTAGAGGAATGGGCA 303
Query 300 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 363
Query 360 GCGACGATACTAGGAGCAAGCACCGTTGAGCCGATGAGGACAGAGTGACATGCGAGTGAT 419
||||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||
Sbjct 364 GCGACGACACTAGGAGCAAGCACCGTTGAGCCGA-GAGGGTAGAGTGACATGAGAATGAT 422
Query 420 GTCAAAT---------C-----GCCACGTGTTTATGTTCTGTTTCTTCTATTTTGGCTGT 465
|| |||| | ||||||||||||||||||||||| |||||||||||| |
Sbjct 423 GTAAAATAATTATGTTCTTTACGCCACGTGTTTATGTTCTGTTTCGTCTATTTTGGCTAT 482
Query 466 AT-TCGCAATCTTTTATTTTACTTCTTGTCGTTTAATTTGTGGATGTTAGTGACCGTTGA 524
|| | |||||||||||||| |||| |||||||| | | | ||||||||||||||||
Sbjct 483 ATGT-GCAATCTTTTATTTG-CTTCATGTCGTTTG-TGT-T---TGTTAGTGACCGTTGA 535
Query 525 TCTCCACCATCTGGGTTGGTTTTTAACTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 584
| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 536 TTTCCACCATCTGGGTTAGTTTTTAGCTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 595
Query 585 TAATGTTTCTACTGTTCTGTAATAT 609
|||| ||| |||||||| |||||||
Sbjct 596 TAATATTTTTACTGTTCGGTAATAT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5