BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482340
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33845.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1206 0.0
> AT2G33845.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:14317676-14319389 FORWARD LENGTH=1331
Length=1331
Score = 1206 bits (653), Expect = 0.0
Identities = 877/978 (90%), Gaps = 43/978 (4%)
Strand=Plus/Plus
Query 43 TCGAGATTTTCTCCAGTCCCAATGGCGTCAAACACCAGCAACGACAATTTCCAACATAGA 102
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 85 TCGAGATTTTCTTCAGTCCCAATGGCGTCAAACACCAGCAACGACAATTTCCAGCATAGA 144
Query 103 CCACGGCAAAGAAACGGACCACCTCCACCGCGTCGACAAGGAAGAAATCCACCGCCTCCG 162
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 145 CCACGGCAAAGAAACGGACCACCTCCTCCGCGGCGACAGGGAAGAAATCCGCCGCCTCCG 204
Query 163 TCGTCGTCAACGCGAACTTCTCAGAATCAGCCACAACAGCATACGCCGCAGGAGAAGAAG 222
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 205 TCTTCGTCAACGCGAACTTCTCAGAATCAGCCACCACAGCATACGCCGCAGGAGAAGAAG 264
Query 223 AAACCAGTGTTCGTGAAGGTAGATCAGCTTAAACCAGGAACAAGCGGCCACACTTTGACC 282
||||| ||||| || || || |||||||||||||| ||||| |||||||||||||||||
Sbjct 265 AAACCGGTGTTTGTCAAAGTGGATCAGCTTAAACCTGGAACGAGCGGCCACACTTTGACT 324
Query 283 GTTAAAGTCGTCGATCAGAATTCCGTACCTCAGAAGCCTGGAGCTGCTTCTTC-TCACA- 340
||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct 325 GTTAAAGTCGTCGATCAGAATTCCGTACCTCAGAAACCGGGAGCTGCTTCTTCTTCTCAT 384
Query 341 -TCCGACCTGCTCGGATCTCTGAGTGTCTCGTTGGAGACGAGACTGCTTGCATCCTCTTC 399
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 385 CTCCGACCTGCTAGGATCTCTGAGTGTCTTGTTGGAGATGAGACTGCTTGCATCCTCTTC 444
Query 400 ACTGCTCGCAACGATCAAGTGGACTTGATGAGACCAGGAGCTACTGTGAATCTCCGGAAT 459
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 445 ACTGCTCGCAACGATCAAGTGGAATTGATGAAACCAGGAGCTACTGTGAATCTTCGGAAT 504
Query 460 GCAAAGATAGATATGTTCAAGGGATCAATGAGGCTTGCTGTTGATAAATGGGGTCGCATC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GCAAAGATAGATATGTTCAAGGGATCAATGAGGCTTGCTGTTGATAAATGGGGTCGCATC 564
Query 520 GAGGTCACTGAACCGGTTGACATTACTGTTAAAGAAGACAACAATTTGTCCCTAGTGGAG 579
|||| ||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 565 GAGGCCACTGAACCAGCTGACATTACTGTTAAAGAAGACAACAATCTGTCCCTTGTGGAG 624
Query 580 TACGAGCTCGTCAATGTCGTTGAGGAATGATCTCTGGC-CCC-ATGTCTCTAATAGGTGA 637
||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||
Sbjct 625 TACGAGCTCGTCAATGTCGTTGAGGAATGATGTCTGACACCCCATGTCTCTAATAGGTGA 684
Query 638 TATATCAAGCGCCACAATGAATTTTGTTTTGGGGTGAACACCGT-GCGGGTTAAATATAT 696
||||||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 685 TATATCAAGTGCCACAATGAATTTTGTTTTGCGGTGAACACCGTTGCGGGTAAAATATAT 744
Query 697 TTATCTTATGATGTTGCAAGTTTGCTATATTTATCTACCGGTTGATTTGTGTTGATCTCG 756
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 745 TTATCTTATGATGTTGCAAGTTTGCTATATTTATCTACCAGTTGATTTGTGTTGATCTCG 804
Query 757 GGTTTGGTATGATCGGTATGTACGCTTTCAGCTGTGGATGCTT-T-T------------- 801
|||||||||| ||||||||||| ||||||||||||||||||| | |
Sbjct 805 GGTTTGGTAT--TCGGTATGTACTCTTTCAGCTGTGGATGCTTCTGTAACCTCTCTACTT 862
Query 802 --GTATGGTCCTTGAAGGGAAGGTTAATGAAAAAATTGGTGAAAAGTTTTGTGTCCAAAA 859
|||||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 863 TTGTATGGTCTTTAAAGAGAAGGTTAATGAAAAAATTGGTGAA---TTT-GTGTCCAAAA 918
Query 860 TATGTCTT-GCAATTTA-T-AAGTTAAGTT-CTGAAATTTTGATTGTGCAACACCCACCa 915
| ||||| |||| ||| | || | | | | | ||||||||||| ||||||| | |
Sbjct 919 T--GTCTTTGCAAATTAGTCAAATCC-GATACACAG-TTTTGATTGTGAAACACCCTCAA 974
Query 916 aaa-aaaCGAAGATCGAGTTGGGGTTTAAGTTGTCAGATTTTGTTAATAAGTAATAACTG 974
||| ||| |||| | || ||||| | | || |||||| |||| |||||| |||||||||
Sbjct 975 AAATAAA-GAAGCTAGACTTGGG-T--A-GTAGTCAGAATTTGCTAATAAATAATAACTG 1029
Query 975 TTACTGAACCGGTTGGTC 992
||||||||||||||||||
Sbjct 1030 TTACTGAACCGGTTGGTC 1047
Score = 270 bits (146), Expect = 2e-71
Identities = 180/195 (92%), Gaps = 7/195 (4%)
Strand=Plus/Plus
Query 993 ATCTTATGACCTAAGACGAAACATGACACGA-CTACCGTCACTTCATCACCTTGCTTCGA 1051
||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||| |||
Sbjct 1129 ATCTTATGACCCAAGACGAAACATGACAC-AGCTACTGTCACTTCATCACCTTGCTGCGA 1187
Query 1052 ACTGCATCCATTCTTGCACTCTTCATTTGAGATTCATCATGCATCATCAATGCAGTCTGA 1111
||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||||
Sbjct 1188 ACTGCATCCATTCTTGC-C-CTTCATTTGAGATTCTTCATGCATCATCGATGCAATCTGA 1245
Query 1112 GCAAATAG-A-A-CATCATATCAGTATCCAGAAAACATAAGCTCATGTGTTGCAGGATTC 1168
|||||||| | | ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1246 GCAAATAGAACATCATCATATCAGTATCGAGAAAACATAACCTCATGTGTTGCAGGATTC 1305
Query 1169 ATGAAAGTTTCTATT 1183
|||||||||||||||
Sbjct 1306 ATGAAAGTTTCTATT 1320
Score = 63.9 bits (34), Expect = 3e-09
Identities = 42/45 (93%), Gaps = 3/45 (7%)
Strand=Plus/Plus
Query 1 AATCTAGGGCTTTCTTCTAGAGATCGAAGAAGAA---TTCACATA 42
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct 23 AATCTAGGGCTTTCTTCTAGAGATCGAAGAAGAAGAGTTCACATA 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5