BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482341
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1304 0.0
> AT2G33850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G28400.1);
Has 3053 Blast hits to 2119 proteins in 133 species:
Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants
- 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink).
| chr2:14321062-14322049 REVERSE LENGTH=988
Length=988
Score = 1304 bits (706), Expect = 0.0
Identities = 854/921 (93%), Gaps = 28/921 (3%)
Strand=Plus/Plus
Query 7 TTTTCCACTAGCTCATGTCTCTTCTTC-T--TCTTAACACTTGTTCTTTTCTCCACCCAA 63
||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 32 TTTTCCACTAGCTCATGTCTCTTCTTCTTCCTCTTAACACTTGTTCTTTTCTCAACCCAA 91
Query 64 ATCGA-TGCAAGAGACAGCTACTCATTTGGCAAGTTCCAAAGAGAAGACCCCAAAGAGCA 122
||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 92 ATC-AGTGCAAGAAACAGCTACTCCTTTGGCAAGTTCCAAAGAGAGGACCCCAAAGAGCA 150
Query 123 AAACCCTAACAATCTTGTCCCTATCCAAACCAACGAGAAGAAAGAGCCAGATGACCAGAA 182
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 151 AAACCCTAACAATCTTGTCCCTATCGAAACCAACGAGAAGAAAGAGCCAGATGACCAGAA 210
Query 183 CCCTGCCTTTATCCCCCAGTCCGAAAACGGGTACGGCTTGTATGGTCACGAGACAACCGA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CCCTGCCTTTATCCCCCAGTCCGAAAACGGGTACGGCTTGTATGGTCACGAGACAACCGA 270
Query 243 CAACAACAATGAAGAGTTGAACAATAACAAGTACGAGGATAACGTTAACTACGACGACTC 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 271 CAACAACAATGAAGAGTTGAACAATAACAAGTACGAGGACAACGTTAACTACGACGACTC 330
Query 303 TTTCTCCACCCCAAGCCTAAGCGAAGCGGCCCAAACGCAAGAATCTTACAAAAACTACAG 362
|||||||||||| |||||||||||| |||| ||||| |||||||||||||| |||||||
Sbjct 331 TTTCTCCACCCCCAGCCTAAGCGAAACGGCTCAAACCCAAGAATCTTACAAGAACTACAA 390
Query 363 AGAGAGCTATCCTAAGACTACCGAGATTTACGACAACAACAAGGACACGAGCTACTACGA 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AGAGAGCTATCCTAAGACTACCGAGATTTACGACAACAACAAGGACACGAGCTACTACGA 450
Query 423 AAACTCAAATGCTTACGGGACGGATAAGAGAGAGGA-G--------G--C-GTACAAGGG 470
|||||| |||||||||||||| ||||||||||| | | | | |||||||||
Sbjct 451 AAACTCGAATGCTTACGGGACAGATAAGAGAGATAATGATATTAATGATCCGTACAAGGG 510
Query 471 TCGTTATAACAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAA 530
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 T--T-ATAGCAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAA 567
Query 531 GAGAGAGAAGGAG--G-CGTACAAGGGTTATAACAACAACGTAGAGAGACAAGGGATGAG 587
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 568 GAGAGAGAAGGAGCCGGCGTACAGGGGTTATAACAACAACGTAGAGAGACAAGGGATGAG 627
Query 588 CGATACGAGGTATATGGCAAATGGTAAGTACTACTACGACCTTGACGACGACAGAAACCA 647
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 628 CGATACGAGGTATATGGCGAATGGTAAGTACTATTACGACCTTGACGATGACAGAAACCA 687
Query 648 CGGCCGTTTCTACCAGAATCATTACTATAACTACAATCCCACCAGTTACAATGAGAAGAA 707
||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 688 CGGCCGTTTCTACCAGAATCATTACTACAACTACAAGCCCACCGGTTACAATGAGAAGAA 747
Query 708 ATCCAACTTCAAGAATCCATACGATTCCAACCAACAATACGAGATGTACGGGGAAGAGCA 767
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 748 GTCCAACTTCAAGAATCCATACGATTCCAACCAACAGTCCGAGATGTTGGGGGAAGAGCA 807
Query 768 AGGAGATCAGTTCACTCCATGAGCATGC-CCACATGAAACAAAAATAAGTATTTGCTTTT 826
|||||||||| ||||||||||||||| | || |||||||||| ||||||||| |||||||
Sbjct 808 AGGAGATCAGATCACTCCATGAGCAT-CACCGCATGAAACAATAATAAGTATCTGCTTTT 866
Query 827 ATGTTTTCGATTTTTGTTTCAAATGGTTTAATTATCAGTCAAAAGTATAATTGT--TT-G 883
| || |||||||||||||||| ||||||||| ||||||||||||||||||| | || |
Sbjct 867 GTATTCTCGATTTTTGTTTCAAGTGGTTTAATCATCAGTCAAAAGTATAATTTTAATTTG 926
Query 884 CATATAAAATTTGGaaaaaaa 904
|||||||||||||||||||||
Sbjct 927 CATATAAAATTTGGAAAAAAA 947
Score = 91.6 bits (49), Expect = 1e-17
Identities = 80/93 (86%), Gaps = 9/93 (10%)
Strand=Plus/Plus
Query 399 CAACAAGGACACGAGCTACTACGAAAACTCAAATGCTTACGGGACGGATAAGAGAGAG-- 456
|||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||
Sbjct 517 CAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAAGAGAGAGAA 576
Query 457 G-AG--G-CGTACAAGGGTCGTTATAACAACAA 485
| || | |||||| ||| |||||||||||||
Sbjct 577 GGAGCCGGCGTACA-GGG--GTTATAACAACAA 606
Score = 82.4 bits (44), Expect = 7e-15
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 478 AACAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAAGAGAGA 536
|||||||||||||||||||||||||||||| | ||| |||||||||| || ||||||||
Sbjct 425 AACAACAAGGACACGAGCTACTACGAAAACTCGAATGCTTACGGGACAGATAAGAGAGA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5