BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482345
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33980.1 | Symbols: atnudt22, NUDT22 | nudix hydrolase homol... 1818 0.0
> AT2G33980.1 | Symbols: atnudt22, NUDT22 | nudix hydrolase homolog
22 | chr2:14349764-14359840 REVERSE LENGTH=1990
Length=1990
Score = 1818 bits (984), Expect = 0.0
Identities = 1306/1450 (90%), Gaps = 68/1450 (5%)
Strand=Plus/Plus
Query 178 AAAGCTGCTGTCTTGATATGTCTTTTCGAAGGAGACAATGGTGATTTGCGTGTGATCCTC 237
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 223 AAAGCTGCTGTCTTGATATGTCTCTTCGAAGGAGACGATGGTGATTTGCGTGTGATTCTT 282
Query 238 ACTAAGAGGTCTTCCACATTGTCTACTCACTCGGGAGAAGTTTCTTTGCCAGGTGGTAAA 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 283 ACTAAGAGGTCTTCCACATTGTCTACTCACTCAGGAGAAGTTTCTTTGCCAGGTGGTAAA 342
Query 298 GCAGAAGAGCATGATAAGGATGATGGGATTACTGCAACCAGAGAGGCAGAGGAAGAGATT 357
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 343 GCAGAAGAGCATGATAAGGATGATGGGATTACTGCAACTAGAGAGGCAGAGGAAGAGATT 402
Query 358 GGATTAGACCCTTTGCTTGTTGATGTTGTTGCTTTCCTCGAACCATTTCTGTCTCAGCAT 417
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 403 GGATTAGACCCTTCGCTTGTTGATGTTGTTGCTTTCCTCGAACCATTTCTATCTCAGCAT 462
Query 418 TTGCTTAGAGTAATTCCTGTGGTAGGAATATTATGGGACAGAAAAGCATTCAATCCAACG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CTGCTTAGAGTAATTCCTGTGGTAGGAATATTATGGGACAGAAAAGCATTCAATCCAACA 522
Query 478 CCAAATCCTGCAGAAGTGGAAGCCGTGTTTGATGCACCCTTTGAAATGTTTCTGAAGGAT 537
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 523 CCAAATCCTGCAGAAGTGGAAGCCGTGCTTGATGCACCCTTTGAAATGTTTCTGAAGGAT 582
Query 538 GAGAATCGGAGATCCGAGGAGTTTGAGTGGATGGGGGAAAAGCATTTGGTCCACTTCTTT 597
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 583 GAGAACCGGAGATCCGAGGAGTTTGATTGGATGGGAGAAAAGCATTTGGTCCACTTCTTT 642
Query 598 GATTACAAAACAGGAGATAGTGATTATGTTATATGGGGTTTAACTGCCAGAATCTTGATA 657
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 643 GATTACAAAACAGGAGATAGTGATTATGTTATATGGGGCTTAACTGCAAGAATCTTGATT 702
Query 658 AGAGCTGCAACAGTGGTTTATCAACGACCACCTGCTTTCATTGAACATAAA-C---C-T- 711
||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 703 AGAGCTGCAACAGTGGTTTATCAACGACCACCTGCTTTCATTGAACAGAAACCTAACTTG 762
Query 712 -A--ACT------TG-A--A-G-TACTC---CA-A--AAT-GCAGAAGCCGCTGGCAAAT 750
| ||| || | | | ||||| | | || || ||||||||||||||||
Sbjct 763 AAGTACTCCAAAATGAACCAGGCTACTCGTTTATATGGATGGCTGAAGCCGCTGGCAAAT 822
Query 751 TTACATGAATCTTGTGAAAATGGAAGATTACTAGGTCATGTCCCAGCATACTGCTTGCGT 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTACATGAATCTTGTGAAAATGGAAGATTACTAGGTCATGTCCCAGCATACTGCTTGCGT 882
Query 811 TATCTAGCTGGAATACCATCAAGATGATCGT-TTCTGTGCATATCTCAATCGTTTGACCT 869
||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 883 TATCTAGTTGGAATATCATCAAGATGATCGTGTT-TGTGCATATCTCAATCGTTTGTGCT 941
Query 870 GAAATACAAGCTCATTCTTGGAAAGTCTTTCAGCATGCTTTTTGGATAAATCTGATATCA 929
|||| |||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 942 GAAAGACAAGCTCATTCTTGGAAAGTCTTTCAGCATGCTTTTTGGATGACTCTGGTATCG 1001
Query 930 GAAATCAACAAATTTAAGCTATCTAATTCATCTGATG-AGGTAGCAAAGGTTAAAAAGCT 988
|||||||||| ||||||| |||||||||||||||||| | | ||||||||||||||||||
Sbjct 1002 GAAATCAACAGATTTAAGTTATCTAATTCATCTGATGCAAG-AGCAAAGGTTAAAAAGCT 1060
Query 989 AAAGGAAAGGCTGTTGCGTAGATGCA-----TAG-T-C------TAGCCCTTTCATGTTC 1035
||||| ||||||| ||||||||| || ||| | | |||| |||||||||||
Sbjct 1061 AAAGGGAAGGCTGCTGCGTAGATCCATCTTCTAGATGCTTTGTTTAGCTCTTTCATGTTC 1120
Query 1036 TCATGTCTCAAGGA-CTACTTATGCAGGTTATAGGACTAGAGCCATTTCTGATTGATTTG 1094
| ||||||||| || | ||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1121 TAATGTCTCAA-GAGCCACTGATGCAGGTAATAGGTTTAGAGCCATTTCTGATTGATTTG 1179
Query 1095 CATATAGGAAGGT-GATTTAATTCTGTGAAACTAAGCCAGTTGATCTGATGACAAGAATA 1153
||| ||||||||| | ||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct 1180 CATCTAGGAAGGTGGTTTTGATTCCGTGAAACTAAGCCAGTTGATCTGATGACAAGGATA 1239
Query 1154 CAATTTGGATATGATTTTCCTAGTGGACCTCTTTACCACATAATCAAATATTGGATGTGC 1213
|||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1240 CAATTTGGATGTGGTTTTCCTAGTGGA-C-CTTTACCACATAATCAAATATTGGATGTGC 1297
Query 1214 TCCTTGAAAACATAGGTAGCTCCCGTTTTGCAAGAAGTGtttttttGTTGGTGAAACCCC 1273
||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1298 TCCTTGAAAACATGGGTAGCTCCCGTTTTGCAAGAAGTGTGTTTTT-T-GGTGAAACCCC 1355
Query 1274 AACCATTTGACCTGAAAGTAAAGCTCGGTCTTGAAAAATCTG---G----TG-------C 1319
||||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 1356 AACCATTTGACCTGAAAGTAAAGCTCGTTCTTGAAAAATCTGCCAGCAGGTGGGTAGTGC 1415
Query 1320 TTGTGCTGCTTTCTGATATTTTCGGGTTTC-CTGGTGGAAGAAATCTAATACATCTGATG 1378
||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 1416 TTGTGCTGCTTTCTGATGTTTTCCGGTTTTTCTGGTGGAACAAAT-TAATACATCTGATG 1474
Query 1379 CGAAAGAAAAGCTCGTTCTTGCCTTCTTGGAGAATCTGGCAGCATAGCGCTTTACCGTGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1475 CGAAAGAAAAGCTCGTTCTTGCCTTCTTGGAGAATCTGGCAGCATAGCGCTTTGTCATGG 1534
Query 1439 TGAAT-TGTGTCTGATATTATCTGGTTGGAAATCTCAATCATATGACCTGAAAGCATAGC 1497
| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1535 TCAATGTGTGTCTGATATTATCTGGTTGGAAATCTCAATCATATGACCTGATAGCAAAGG 1594
Query 1498 CGCATTTGACTTCAGCTAAAACCTCTCCAGATACATTGTCCTAATAGGTCTGAAATCAAA 1557
|||||||||||||| ||||| || |||| || ||| ||||||||||||| || |||
Sbjct 1595 AGCATTTGACTTCAGTTAAAAGAGCTACAGACACGCTGTTCTAATAGGTCTGAGATGAAA 1654
Query 1558 TTCCGTGTAA 1567
||||||||||
Sbjct 1655 TTCCGTGTAA 1664
Score = 215 bits (116), Expect = 1e-54
Identities = 156/174 (90%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTCGGGAGCATCAGCCGCGTCGCCAACGGCCAAAGGATTCAAATTTGGATCTTCC 60
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||
Sbjct 1 ATGAAGTCGGGAGCATCAGCCGCGTCGCCAACGGCGAAAAGCTTCAATTTTGGATCTTCC 60
Query 61 AGACTCTTAGCCCTGGCGCAGCAGCTGCGTGTATACAAGCCGCCGCTTTATTCA-CTGTT 119
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 61 AGACTCTTAGCCTTGGCGCAGCAGCTGCGTGTATACAAGCCGCCGCTTTCGTCATCC-TT 119
Query 120 CGACGAG-GCGGAAGAGATGCGTG-GATACAAGGAAAGCACCACGGAA-TCGAT 170
||||||| | ||||||| ||| || | |||||||||||||||| |||| |||||
Sbjct 120 CGACGAGAG-GGAAGAGCTGCTTGCG-TACAAGGAAAGCACCA-GGAAATCGAT 170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5