BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482347

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34000.1 | Symbols:  | RING/U-box superfamily protein | chr2...   684    0.0  


> AT2G34000.1 | Symbols:  | RING/U-box superfamily protein | chr2:14365177-14365632 
FORWARD LENGTH=456
Length=456

 Score =  684 bits (370),  Expect = 0.0
 Identities = 410/429 (96%), Gaps = 3/429 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTTTCAATGATCCTTCATTAAACTCAATCATCCTTTGGTTCGCCTCCGTAACGTCT  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGTTTCAATGATCCTTCATTAAACACAATCATCCTTTGGTTCGCCTCCGTAACGTCT  60

Query  61   CTGGTGACTATCTCAGTCATCTTCGCCCTTCTCATTATTTGTTTACTCAAACGCCGTAGG  120
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTCGTGACTATCTCAGTCATCTTCGCCCTTCTCATTATTTGTTTACTCAAACGCCGTAGG  120

Query  121  TTTGATGTATCACCAGAAACCGAGAATGAGCACCGCGGAAGAAGAGAGCCACCGTGCCAA  180
            |||||||||||||| ||||||||||| ||| |||  |||||||||||||||| |||||||
Sbjct  121  TTTGATGTATCACCGGAAACCGAGAACGAGAACCAAGGAAGAAGAGAGCCACGGTGCCAA  180

Query  181  GGGCTTAGCGCTTCCGTGATTGCCGCCTTTCCCACTTTTTCTTACAAACCGGATAATAAC  240
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct  181  GGGCTTAGCGCTTCCGTGATTGCTGCCTTTCCCACCTTTTCTTACAAACCGGATAATAAT  240

Query  241  GATCCCGAGAGCAACAATCAGGAGATCGAGTGTCCGGTTTGCTTAGGGTTAATCCCCAAG  300
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  GATCCTGAGAGCAACAATCAGGAGATCGAGTGTCCGGTTTGCTTAGGATTAATCCCCAAG  300

Query  301  AATGTTGTAATTAAGGTTTTACCAAATTGTATGCACATGTTTGATGAGGAATGTATCGGT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AATGTTGTAATTAAGGTTTTACCAAATTGTATGCACATGTTTGATGAGGAATGTATCGGT  360

Query  361  AAGTGGCTTGAATCACACGCAACTTGTCCTGTGTGTCGTAGACTTGT-TGAGCCGATGGC  419
            |||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||| |
Sbjct  361  AAGTGGCTTGAATCACACGCAACTTGTCCTGTGTGTCGTAGA-TTGGCTGAGCCAATGAC  419

Query  420  TAAGCAATG  428
            || ||||||
Sbjct  420  TA-GCAATG  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5