BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482355
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34090.2 | Symbols: MEE18 | maternal effect embryo arrest 18... 2416 0.0
> AT2G34090.2 | Symbols: MEE18 | maternal effect embryo arrest
18 | chr2:14396178-14399265 REVERSE LENGTH=1616
Length=1616
Score = 2416 bits (1308), Expect = 0.0
Identities = 1480/1562 (95%), Gaps = 15/1562 (1%)
Strand=Plus/Plus
Query 1 GTGAGATGTTTCATCATTCTCTGTTTCAGTTCGGTAATGGCGGAGATTTGCTATTTTGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTGAGATGTTTCATCATTCTCTGTTTCAGTTCGGTAATGGCGGAGATTTGCTATTTTGGG 119
Query 61 GGTCTGGTCCATTATAAAGCACCA--TC-TCCTTTTTCTCTTCATTCTCTCTTCCGCAGC 117
||||| |||||||||||| ||||| || |||||| ||||||||||||||||||||||||
Sbjct 120 GGTCTAGTCCATTATAAATCACCATCTCTTCCTTTGTCTCTTCATTCTCTCTTCCGCAGC 179
Query 118 ---AAGCCCCAATACTACAATTCCACTTCTCTCATGGCTGAATGTCGT-TCTTCCTCCAC 173
||||| || |||||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 180 AAGAAGCCACATTACTACAATTCCACTTCTCTCATGGCTGAATGTC-TCTCCTCCTCCAC 238
Query 174 CGTGGAGCCTCCTTCTCTTCTCGTCTTCTCAGGTTGCACTGGATTTAACGGTGTGGTTGA 233
|||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||||||
Sbjct 239 CGTGGAGCCTCCTTCTCTCCTCGTCTTCTCAGGTGGTACTGGATTTAATGGTGTGGTTGA 298
Query 234 AGAGTTGAAGAAGTTAACAACCCGAGTCGCTCATGTTCTTCCTGTCTCTGATGATGGAGG 293
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 299 AGAGTTGAAGAAGTTAACAACACGAGTCGCTCATGTTCTTCCTGTCTCTGATGATGGTGG 358
Query 294 AAGTACTGCTGAGATTGTTCGTGTTCTCGGCGGGCCAGCGGTTGGTGATATACGTTCTAG 353
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 359 AAGTACTGCTGAGATTGTTCGTGTTCTCGGAGGGCCAGCGGTTGGTGATATACGTTCGAG 418
Query 354 GTGTTTAAGGCTGTCTGATGAAAGTACTTCTGAGGCACTTGCTGTTAGGCGGTTGCTCGG 413
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 419 GTGTTTAAGGCTGTCTGATGAGAGTACTTCAGAGGCACTTGCTGTTAGGCGGTTGCTTGG 478
Query 414 CCATCGCTTACCTATTGATGCACATCAGGCCAAGAAAGATTGGTACGATATTGTAGAAGG 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CCATCGCTTACCTATTGATGCACATCAGGCCAAGAAAGATTGGTACGATATTGTAGAAGG 538
Query 474 TAATCATTCTCTGTGGGATGGTGTATCAAGACCCTACAGTGAAACAATCCGCGCTTTCTT 533
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 TAATCATTCTCTGTGGGATGGTGTATCAAGACCCTACAGTGAAACAATTCGCGCTTTCTT 598
Query 534 GATTTACTTTCAGAATGAGATTCATAGACGACCTAATGAGAGATTTTGCTTCAGTAATGG 593
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 GATATACTTTCAGAATGAGATTCATAGGCGACCTAATGAGAGATTTTGCTTCAGTAATGG 658
Query 594 AAGCATTGGGAACTTCTTCTTTGCAGGAGCAAGGATATTTTTCCAGTCTTTAGATGCTGC 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGCATTGGGAACTTCTTCTTTGCAGGAGCAAGGATATTTTTCCAGTCTTTAGATGCTGC 718
Query 654 GATTTTTCTGTTTTCACGTGTTTCAGAGATTCCTTGTGACAGTTTGGTCCTCCCAGTGAT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AATTTTTCTGTTTTCACGTGTTTCAGAGATTCCTTGTGACAGTTTGGTCCTCCCAGTGAT 778
Query 714 ATCAACCAATGATAGGCTTACACTAGGATGTGAATTACAGGATGGGACTATAATACGCGG 773
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCAACCAATGATAGGCTAACACTAGGATGTGAATTACAGGATGGGACTATAATACGCGG 838
Query 774 ACAGAACGAAATCTCTCACCCGACCAATGGAACTATGCAGACTGTTGACAAGAGACATTG 833
|||||||||||| ||||||||||||| ||| |||| |||||| |||||||||||||||||
Sbjct 839 ACAGAACGAAATTTCTCACCCGACCACTGGGACTACGCAGACAGTTGACAAGAGACATTG 898
Query 834 TTCGAATTCCGCTCTTCCATCAAAGATAAAGAGAGTGTTTTACATGTCAAGTGAAGGCAA 893
||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTCTACTTCCGCTCTCCCATCGAAGATAAAGAGAGTGTTTTACATGTCAAGTGAAGGCAA 958
Query 894 TAATCTGCTTCATGAGGTCTTCCCACCAGTTAACCCAACTGTCCTGGAGCAGTTGAGAAG 953
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 TAATCTGCTTCATGAGGTCTTCCCACCAGTTAACCCAACTGTCCTAGAGCAGTTGAGAAG 1018
Query 954 TGTGGACTGTATCGTTTATGCAATGGGATCCCTTTTCACTTCCGTTTGCCCATCACTGGT 1013
||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1019 CGTGGACTGTATCGTTTACGCAATGGGATCCCTGTTCACTTCCATTTGCCCATCACTGGT 1078
Query 1014 ATTGCTTGGTGTTGGGGAGATTATCTCTTCCAGGTCATGTCGTAAGGTACTTCTGTTGAA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 TTTGCTTGGTGTTGGGGAGATTATCTCTTCCAGGTCATGTCGTAAGGTACTTCTTTTGAA 1138
Query 1074 TGGTAGCCAAGACCGAGAAACAAGCGGGTTCACTGCTTCCTGCTTTGTGACTGCTATTGC 1133
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1139 CGGTAGCCAAGACCGAGAAACAAGCAGGTTCACCGCTTCCTGCTTTGTGACTGCTATCGC 1198
Query 1134 TGACGCTCTCAATAGGACTCATGGAGATCCTAATATCCGGCTCAAGAATCCCCCTGGATA 1193
|||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1199 TGACGCTCTCAACAGAACTCATGGAGATACTAATATTCGGCTCAAGAATCCCCCTGGATA 1258
Query 1194 TTACATCAACACTCTCTTGGTCCCGAAAGATGGAGAAATAGCTGTAGATCTCAAACAATT 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 TTACATCAACACTCTCTTGGTCCCGAAAGATGGAGAAATAGCAGTAGATCTCAAACAATT 1318
Query 1254 GTCTGAACAAGGGATCAAA-GATGTTGTTAGTATCTCTGTCCTTCACTTGTTTTCAAGTT 1312
||||||||||||||| | | |||||||| ||||||||| |||||||||||||| ||||||
Sbjct 1319 GTCTGAACAAGGGAT-ATATGATGTTGTCAGTATCTCTTTCCTTCACTTGTTTCCAAGTT 1377
Query 1313 TATGTGCACAACAAACACTCACCGTTGCGTCCGCTTTGTTGCAGAGAGTTGTGGA-ATGT 1371
|||||||||||||||||||||| ||| | ||| || | ||||||||||| ||||| | ||
Sbjct 1378 TATGTGCACAACAAACACTCACTGTTACCTCCACTCTATTGCAGAGAGTCGTGGAGA-GT 1436
Query 1372 GTTGGTGACCCGAAGCACGGTATCTTGTTCAACCCGAGCTCACTGATAAACACACTGGCC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GTTGGTGACCCGAAGCACGGTATCTTGTTCAACCCGAGCTCACTGATAAACACACTGGCC 1496
Query 1432 GGTTTGGTGGAGTAAATAGTGATTCTTTAGGCCAGAGCTAGTTTCTTCGTT-TAAGCAAA 1490
|||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1497 GGTTTGGTGGAGTAAATAGTGATTCTTTAGGCCAGAGCTAGTTTCTTC-TTCTACGCAAT 1555
Query 1491 TGAAACCATTATTTCTTTTGTTACTGTTAAATTTGATCCTTTGGTGAATTGATATAAAAG 1550
|| ||||| |||| ||||||||||||| | ||||||||||| |||||||||||| ||||
Sbjct 1556 TGGGACCATGATTT-TTTTGTTACTGTTTAGTTTGATCCTTTAGTGAATTGATATGAAAG 1614
Query 1551 GT 1552
||
Sbjct 1615 GT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5