BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482359
Length=569
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34160.1 | Symbols: | Alba DNA/RNA-binding protein | chr2:1... 846 0.0
AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:1... 484 3e-136
> AT2G34160.1 | Symbols: | Alba DNA/RNA-binding protein | chr2:14426203-14427383
FORWARD LENGTH=636
Length=636
Score = 846 bits (458), Expect = 0.0
Identities = 535/572 (94%), Gaps = 6/572 (1%)
Strand=Plus/Plus
Query 1 TTAGGGTTACGGATTCCGAATTAGCAACCATGGAAGAGATCACCGATGGAGTGAACAACA 60
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 53 TTAGGGTTACGGATTCCG-ATTAGCAAGCATGGAAGAGATCACCGATGGAGTGAACAACA 111
Query 61 TGAACTTGGCCGTTGATTCCCAGAAGAAAAATCGGATTCAGGTTTCAAACACCAAGAAAC 120
||||||| ||| ||||| ||||||||||| |||||||||||||| ||||| |||||||
Sbjct 112 TGAACTTAGCCACCGATTCGCAGAAGAAAAACCGGATTCAGGTTTCCAACACTAAGAAAC 171
Query 121 CATTGTTCTTCTACGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGATGTCGAAC 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 172 CATTGTTCTTCTATGTCAATCTCGCCAAGAGGTATATGCAGCAGTACAATGATGTTGAAT 231
Query 181 TCTCTGCCCTTGGAATGGCCATTGCAACTGTTGTTACTGTTGCTGAAATACTGAAGAACA 240
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 TGTCTGCCCTTGGCATGGCCATTGCAACTGTTGTTACTGTTACTGAAATACTGAAGAACA 291
Query 241 ATGGTTTTGCTGTTGAGAAGAAGATTATGACTTCAACTGTGGATATTAAGGATGACT-CG 299
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
Sbjct 292 ATGGTTTTGCTGTTGAGAAGAAGATCATGACTTCAACTGTTGATATTAAGGATGA-TGCA 350
Query 300 AGAGGACGTCCTGTGCAGAAAGCTAAGATTGAAATTACGCTTGCAAAGTCAGAGAAGTTT 359
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 351 AGAGGACGTCCTGTGCAGAAAGCTAAGATTGAGATTACGCTTGTGAAGTCAGAGAAGTTT 410
Query 360 GATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGCTGCAGAAGCTCAGGTGCAGAAC 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 411 GATGAACTAATGGCTGCAGCCAATGAAGAAAAAGAAGATGCAGAAGCTCAGGTGCAGAAC 470
Query 420 TGAAattagctttttactattttggttttcttgatgcttattttataaagggctttattt 479
||||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 471 TGAAAATAGCTTTTAACTATTTTGGGTTTCTTGATGCTTATTCTATAAAGGGCTTTATTT 530
Query 480 gttttatttcattaatttttggcttgtttATCA-A-TGGATGATTTGTTGTACCTGTTAA 537
|||| ||||||||||||||||||||||| |||| | |||||| ||||||||| |||||||
Sbjct 531 GTTTAATTTCATTAATTTTTGGCTTGTT-ATCACAATGGATGGTTTGTTGTATCTGTTAA 589
Query 538 CATTTGATATGAAGAATGATAGCTAAACAATA 569
| ||||||| ||||||||||||||||||||||
Sbjct 590 CTTTTGATAGGAAGAATGATAGCTAAACAATA 621
> AT1G29250.1 | Symbols: | Alba DNA/RNA-binding protein | chr1:10223266-10224727
REVERSE LENGTH=723
Length=723
Score = 484 bits (262), Expect = 3e-136
Identities = 348/391 (89%), Gaps = 0/391 (0%)
Strand=Plus/Plus
Query 30 ATGGAAGAGATCACCGATGGAGTGAACAACATGAACTTGGCCGTTGATTCCCAGAAGAAA 89
|||||||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 136 ATGGAAGAGATCACGGAAGGAGTTAACAACATGAACTTGGCTGTTGATACCCAGAAGAAG 195
Query 90 AATCGGATTCAGGTTTCAAACACCAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 149
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 196 AATCGGATTCAAGTTTCCAACACTAAGAAACCATTGTTCTTCTACGTCAATCTCGCCAAG 255
Query 150 AGGTATATGCAGCAGTACAATGATGTCGAACTCTCTGCCCTTGGAATGGCCATTGCAACT 209
||||| ||||||||||||| |||||||||| | ||||| || |||||||| ||||| |||
Sbjct 256 AGGTACATGCAGCAGTACACTGATGTCGAATTGTCTGCACTAGGAATGGCTATTGCCACT 315
Query 210 GTTGTTACTGTTGCTGAAATACTGAAGAACAATGGTTTTGCTGTTGAGAAGAAGATTATG 269
|||||||| || ||||| ||| ||||||||||||| ||||||||||| |||||||| |||
Sbjct 316 GTTGTTACGGTCGCTGAGATATTGAAGAACAATGGCTTTGCTGTTGAAAAGAAGATCATG 375
Query 270 ACTTCAACTGTGGATATTAAGGATGACTCGAGAGGACGTCCTGTGCAGAAAGCTAAGATT 329
|| || ||||||||||| |||||||| || || || ||||||||||||||||||||||||
Sbjct 376 ACATCGACTGTGGATATCAAGGATGATTCAAGGGGTCGTCCTGTGCAGAAAGCTAAGATT 435
Query 330 GAAATTACGCTTGCAAAGTCAGAGAAGTTTGATGAACTAATGGCTGCAGCCAATGAAGAA 389
|| || |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 436 GAGATCACGCTTGCCAAGTCTGAGAAGTTTGATGAACTAATGGCTGCAGCTAATGAAGAG 495
Query 390 AAAGAAGCTGCAGAAGCTCAGGTGCAGAACT 420
|| || ||||||||||| || | ||| ||||
Sbjct 496 AAGGAGGCTGCAGAAGCCCAAGAGCAAAACT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27327375968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5