BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482362
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34190.1 | Symbols: | Xanthine/uracil permease family prote... 2959 0.0
> AT2G34190.1 | Symbols: | Xanthine/uracil permease family protein
| chr2:14436809-14439516 FORWARD LENGTH=1940
Length=1940
Score = 2959 bits (1602), Expect = 0.0
Identities = 1769/1850 (96%), Gaps = 9/1850 (0%)
Strand=Plus/Plus
Query 1 ACTACCAAAAAGCTCTCTTCTAACTCAGCTGCAACTTCGAAAAAGAGAAGcttttttcac 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ACTACCAAAAAGCTTTCTTCTAACTCAGCTGCAACTTCGAAAAAGAGAAGC-TTTTTCGC 59
Query 61 tttgccttgtcctcatttttttctctttcacacaccttttcttttttattt-AAACCACT 119
||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||||
Sbjct 60 TTTGCCTTGTCCTCA----TTTCTCTTTCACACAACTTTTCTATCTTATTTAAAACCACT 115
Query 120 CAGTTCTTGTTTTCTCAGTCATTTCTCTGGTTCAATCAGATCCTTTTAGTTTTCCTGATT 179
| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 116 CTGTTCTTGTTTTCTCAGTCATTCCTCTGATTCAATCAGATTCTTTTAGTTTTCCTGATT 175
Query 180 CTTTAGCTGATTCATGAGCTCATAAGAAGAAGATTTG-TGTTGAGTGTTGACCCAGAAAG 238
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 176 CTTTAGCAGATTCATGAGCTCATAAGAAGAAGATTTGTTGTTGAGTGTTAACCCAGAAAG 235
Query 239 AAAAAGAAAGACTCTAGAATCATGGATCCTGTAAAGCCAGAGGAGATAAGTCACCCACCA 298
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 AAAAAGGAAGACTTTAGAATCATGGATCTTGTAAAGCCAGAGGAGATAAGTCACCCACCA 295
Query 299 ATGGATCAGCTTCAGGGTTTAGAGTATTGTATTGACTCAAACCCTCCATGGGGAGAAGCC 358
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 296 ATGGATCAGCTTCAGGGTTTAGAGTACTGTATTGACTCAAACCCTCCATGGGGAGAAGCT 355
Query 359 ATAGCTTTAGGTTTCGAGCATTACATTTTGGCTTTAGGAACTGCAGTGATGATACCTTCA 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 ATAGCTTTAGGTTTCGAGCATTACATTCTGGCTTTAGGAACTGCAGTGATGATACCTTCA 415
Query 419 TTTCTTATTCCTATGATGGGTGGAGATGATGGTGATAAAGTGAGAGTTGTTCAGACACTA 478
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATTCTTGTTCCTATGATGGGTGGAGATGATGGTGATAAAGTGAGAGTTGTTCAGACACTA 475
Query 479 CTGTTTCTTCAAGGTGTTAACACTCTTCTTCAAACATTATTTGGAACTCGTCTTCCAACT 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTGTTCCTTCAAGGTGTTAACACTCTTCTTCAAACATTATTTGGAACTCGTCTTCCAACT 535
Query 539 GTCATTGGAGGCTCTTATGCATTCATGGTTCCCATCATTTCAATCATCCATGACTCTTCT 598
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 GTCATTGGAGGCTCATATGCATTCATGGTTCCAATCATTTCAATCATCCATGACTCTTCT 595
Query 599 TTGACCCGTATCGAAGATCCACAATTGAGATTTCTAAGTACAATGAGAGCAGTACAAGGC 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 596 TTGACCCGTATCGAAGATCCACAATTGAGATTTCTAAGTACAATGAGAGCGGTACAAGGC 655
Query 659 GCGATCATCGTTGCATCCAGCCTTCAAATCATCCTCGGTTTCAGCCAAATGTGGGCTATC 718
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 656 GCGATCATAGTTGCATCCAGCGTTCAAATTATCCTCGGTTTCAGCCAAATGTGGGCTATC 715
Query 719 TGTTCAAGATTCTTTAGTCCTATTGGTATGGTTCCGGTTATTGCATTAACAGGTTTTGGA 778
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 716 TGTTCAAGATTCTTTAGTCCTATTGGTATGGTTCCTGTTATTGCATTAACAGGTTTTGGA 775
Query 779 CTCTTCAACAGAGGATTCCCAGTGGTTGGTAATTGTATTGAGGTAGGACTTCCCATGCTT 838
|||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||
Sbjct 776 CTCTTCAACAGAGGATTCCCAGTGGTGGGTAATTGTGTTGAGATAGGACTCCCCATGCTT 835
Query 839 ATCCTCTTTGTCATCTTCTCTCAGTATCTGAAGAGCTTTCAGTTCAGGCAATTCCCAGTA 898
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 836 ATTCTCTTTGTCATCTTCTCTCAGTATCTGAAGAACTTTCAGTTCAGGCAATTCCCAGTA 895
Query 899 GTCGAGAGGTTCGCTCTTATTATAGCGCTAATCGTGGTGTGGGCTTACGCACATGTCTTG 958
|| ||||| || ||||||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 896 GTGGAGAGATTTGCTCTTATTATAGCGCTTATCATCGTGTGGGCTTACGCGCATGTCTTG 955
Query 959 ACAGCGAGTGGGGCTTACAAACACCGACCACATCAGACACAAGTAAACTGCAGAACCGAT 1018
|| || |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 956 ACCGCCAGTGGGGCTTACAAACACCGACCACACCAGACACAATTAAACTGCAGAACGGAT 1015
Query 1019 ATGTCTAACCTCATTTCTTCTGCTCCTTGGATCAAGATTCCTTATCCACTTCAATGGGGA 1078
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATGTCTAACCTCATTTCATCTGCTCCTTGGATCAAGATTCCTTATCCACTTCAATGGGGA 1075
Query 1079 GCACCTAGCTTTGATGCTGGTCATGCTTTCGCTATGATGGCCGCTGTTCTAGTCTCACTC 1138
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1076 GCACCTAGCTTTGATGCTGGTCATGCTTTTGCTATGATGGCCGCTGTTTTAGTCTCACTC 1135
Query 1139 ATTGAGTCTACTGGAGCTTTCAAAGCTGCTGCACGACTGGCGAGCGCCACACCTCCTCCA 1198
|||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1136 ATTGAGTCAACTGGAGCTTTCAAAGCTGCTGCACGACTGGCTAGCGCTACGCCTCCTCCA 1195
Query 1199 CCTCATGTTCTTAGTCGCGGAATTGGCTGGCAAGGCATTGGGATCCTCTTAAACGGTTTA 1258
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1196 CCTCATGTTCTTAGCCGTGGAATAGGCTGGCAAGGCATTGGGATCCTCTTAAACGGTTTA 1255
Query 1259 TTTGGAACGCTAAGCGGTTCAAGTGTCTCTATAGAGAACATTGGATTACTAGGAAGCACC 1318
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1256 TTTGGAACACTAAGCGGTTCAAGTGTCTCTGTAGAGAACATTGGATTACTAGGAAGCACC 1315
Query 1319 CGAGTTGGAAGCCGCAGAGTCATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATG 1378
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGAGTTGGAAGCCGCAGAGTTATCCAAATCTCAGCAGGATTTATGATATTCTTCTCAATG 1375
Query 1379 CTAGGCAAATTCGGGGCATTGTTCGCTTCAATACCTTTCACAATATTTGCAGCCGTGTAC 1438
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1376 CTAGGCAAATTCGGGGCATTGTTCGCTTCAATACCTTTCACGATATTTGCAGCTGTGTAC 1435
Query 1439 TGTGTCTTGTTTGGTCTTGTTGCTTCAGTTGGGCTCTCTTTTCTGCAATTCACAAACATG 1498
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1436 TGCGTCTTGTTTGGTCTTGTTGCTTCAGTTGGACTCTCTTTTCTGCAATTCACAAACATG 1495
Query 1499 AACTCCCTGAGAAATCTCTTCATCGTCGGTGTGTCTCTCTTCTTAGGATTATCGATTCCC 1558
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1496 AACTCTCTGAGAAATCTCTTCATCGTCGGTGTGTCTCTCTTCTTAGGATTATCGATCCCC 1555
Query 1559 GAATACTTCAGAGACTTCAGCATGAAAGCATTACACGGTCCAGCTCACACCAATGCTGGT 1618
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1556 GAATACTTCAGAGATTTCAGCATGAAAGCATTACACGGCCCAGCTCACACCAATGCTGGT 1615
Query 1619 TGGTTCAATGATTTCTTGAACACAATCTTCTTATCTTCACCAATGGTCGCACTGATGGTG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 TGGTTCAATGATTTCTTGAACACAATCTTCTTATCTTCACCAATGGTCGCACTGATGGTG 1675
Query 1679 GCAGTGTTCTTGGACAATACTCTGGACTATAAAGAGACCGCAAGAGATC-GAGGATTGCC 1737
||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1676 GCAGTGTTCTTGGACAACACTCTGGACTATAAAGAGACCGCGAGAGA-CAGAGGATTGCC 1734
Query 1738 TTGGTGGGCTAAGTTCAGAACTTTCAAAGGAGACAGCAGGAATGAGGAATTCTACACTCT 1797
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1735 TTGGTGGGCTAAGTTCAGAACTTTCAAAGGAGATAGCAGGAATGAGGAATTCTACACTCT 1794
Query 1798 CCCTTTCAACCTCAATCGTTTTTTCCCTCCTTCATAGAAAGTTTTACTCT 1847
||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1795 CCCTTTCAACCTCAACCGTTTCTTCCCTCCTTCATAGAAAGTTTTACTCT 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92469403890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5