BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482364
Length=2937
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34210.1 | Symbols: | Transcription elongation factor Spt5 ... 4104 0.0
AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription facto... 1520 0.0
> AT2G34210.1 | Symbols: | Transcription elongation factor Spt5
| chr2:14445938-14450522 FORWARD LENGTH=2970
Length=2970
Score = 4104 bits (2222), Expect = 0.0
Identities = 2549/2704 (94%), Gaps = 34/2704 (1%)
Strand=Plus/Plus
Query 245 GTTTCATTGTAAGTGGTGAAACTGACCTTCCTAGTGAGGATACTAATCATCATAGGCAAT 304
|||||||||||||||||||| |||||||||||| ||||||| || |||||| ||||||||
Sbjct 290 GTTTCATTGTAAGTGGTGAAGCTGACCTTCCTAATGAGGATTCTGATCATCGTAGGCAAT 349
Query 305 TTTACCAACGGGGGTTTAATCCTCATGAAGAAGATGTCGACGAGTTTGAGAAGAGAACTT 364
|||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 350 ATTACCAACGGGGGTTTCATCCTCATGAAGAAGATGTCGACGAGTTGGAAAAGAGAACTT 409
Query 365 TGGAAAGGTTGTCTTCTAGGATGCATGCAGAGGATGATGATGAGCTTGATGAGGTTAACG 424
||||||| |||||| | | || ||||| |||||||| ||||||||||||| |||||||
Sbjct 410 TGGAAAGATTGTCTACGA-AAT--ATGCAAAGGATGATTATGAGCTTGATGATGTTAACG 466
Query 425 ACATTGAGCAACAAGCGCTTTTGCCATCAGTCCGCGACCCGAAATTGTGGTTGGTCAAAT 484
|| |||| |||||||||||||||||||||||||| ||||| ||| ||||| |||| ||||
Sbjct 467 ACGTTGATCAACAAGCGCTTTTGCCATCAGTCCGTGACCCTAAACTGTGGCTGGTGAAAT 526
Query 485 GTGCGATTGGCCGTGAAAGAGAAGTTGCTGTTTGTCTTATGCAAAAAATCATAGATAGAG 544
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 527 GTGCGATTGGACGTGAAAGAGAAGTTGCTGTTTGTCTTATGCAAAAAATCGTAGATAGAG 586
Query 545 GATCAGAGTTCAAGATTAGATCTGCTATTGCCCTTGATCATCTTCAAAACTATGTATACA 604
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 587 GATCAGAGTTCAAGATTAGATCTGCTATTGCTCTTGATCATCTTCAAAACTATGTATATA 646
Query 605 TTGAAGCGGATATGGAAGCTCATGTGAAAGAGGCTATCAAGGGCATGCGGAATATTTATG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TTGAAGCGGATATGGAAGCTCATGTGAAAGAGGCTATCAAGGGCATGCGGAATATTTATG 706
Query 665 CTAATCAGAAGATTTTACTTGTCCCCATAAAAGAAATGACAGATGTTCTTTCTGTTGAAA 724
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||| || |
Sbjct 707 CTAATCAGAAGATTTTGCTTGTCCCCATAAAAGAAATGACTGCTGTTCTTTCTGTCGAGA 766
Query 725 GTAAAGCAATCGATCTATCCCGTGA-TACATGGGTTAGAATGAAACTTGGGATATATAAG 783
|||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 767 GTAAAGCAATCGATTTATCCCGTGACT-CGTGGGTTAGAATGAAACTTGGGATATATAAG 825
Query 784 GGTGATCTAGCTCAGGTGGTTGATGTTGATAATGTGCGTAAGAGGGTCACAGTCAAGTTG 843
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 826 GGTGATCTAGCTCAGGTGGTTGATGTTGATAATGTACGTAAGAGGGTCACAGTCAAGTTG 885
Query 844 ATCCCAAGAATTGATCTGCAGGCTCTAGCCAATAAGCTGGAAGGAAGAGAGAATGTCAAG 903
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 886 ATCCCAAGAATTGATCTGCAGGCTCTAGCCAATAAGCTGGAAGGAACAGAGAATGTCAAG 945
Query 904 AAGAAAGCTTTTGCTCCACCTCCACGTTTCATGAACATTGATGAGGCAAGGGAACTTCAC 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AAGAAAGCTTTTGCTCCACCTCCACGTTTCATGAACATTGATGAGGCAAGGGAACTTCAC 1005
Query 964 ATACGTGTTGAGCACCGGCGTGATCCAATGACGGGTGACCCCTTTGAGAATATCGATGGT 1023
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1006 ATACGTGTTGAGCACCGGCGTGATCCAATGACGGGTGACTACTTTGAGAATATCGGTGGA 1065
Query 1024 ATGCTTTTCAAAGATGGTTTTCTTTACAAGAAAGTATCGACGAAGTCAATTGCTGCTCAG 1083
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1066 ATGCTTTTCAAAGATGGTTTTCTTTACAAGAAAGTATCGACGAAGTCCATTGCTGCTCAG 1125
Query 1084 AATATTACACCAACCTTCGATGAACTTGAAAGATTCAAGAGACCAAATGAAAATGGGGAG 1143
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 AATGTAACACCAACCTTCGATGAACTTGAAAGATTCAAGAGACCAAATGAAAATGGGGAG 1185
Query 1144 ATCGACTTCGTTGATCCCTCCACTTTATTTGCAAATAGAAAGAAGGGTCATTTCATGAAA 1203
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATCGACTTCGTTGATGAGTCGACTTTATTTGCAAATAGAAAGAAGGGTCATTTCATGAAA 1245
Query 1204 GGTGATGCGGTTATTGTTATCAAGGGGGATCTTATAAACTTAAAGGGTTGGATTGAGAAA 1263
||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1246 GGTGATGCGGTTATTGTGATCAAGGGGGATCTTAAAAACTTGAAGGGCTGGATTGAGAAA 1305
Query 1264 GTAGATGAAGAGAATGTTCTTATCAGATCGA-ATATGAAAGGTCTTCCTAATCCTATTGC 1322
||||||||||||||||| ||||||||||| | | ||||||| ||||||||||||||||||
Sbjct 1306 GTAGATGAAGAGAATGTCCTTATCAGATC-AGAGATGAAAGATCTTCCTAATCCTATTGC 1364
Query 1323 GGTAAATGAGAGAGAGCTTTGCAAATACTTTGAACCTGGAAATTTTGTGAAGGTTGTGTC 1382
||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GGTTAATGGGAGAGAGCTTTGTAAATACTTTGAACCTGGAAATTTTGTGAAGGTTGTGTC 1424
Query 1383 TGGCATCCATGAAGGAGGAACTGGCATGATTGTCAAAGTTGATCAGCATATGCTTATCAT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGGCATCCATGAAGGAGGAACTGGCATGATTGTCAAAGTTGATCAGCATATGCTTATCAT 1484
Query 1443 TCTGTCTGATACAACCAAAGAACATATTCGCGTCTTCGCTGATCATGTCGCCAAGAGTGC 1502
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1485 TCTGTCTGATACAACCAAAGAACATATTTGCGTCTTCGCTGATCATGTTGCCAAGAGTGC 1544
Query 1503 AGAAGTGACTAATGCTGTCACAAAAATTGGAGACTATGAACTTCATGATCTTGTGATTCT 1562
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1545 AGAAGTGACTAAAGGTGTCACAAAAATTGGGGACTATGAACTTCATGATCTTGTGATTCT 1604
Query 1563 AAGTGACTTGAGCTTTGGAGTAATCATAAAACTTGATAGTGAAGCTATCCAGATTCTTAA 1622
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1605 AAGTGACTTTAGCTTTGGAGTAATCCTAAAACTTGATAGTGAAGCTATCCAGATTCTTAA 1664
Query 1623 AGGGGTTCCTGACAGCTCAGAGGTCTCTATTGTCAAAGCCAGCGAAATAAAATACAAAAT 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AGGGGTTCCTGACAGCTCAGAGGTCTCTATTGTCAAAGCCAGCGAAATAAAATACAAAAT 1724
Query 1683 TTGGAAGAAAAGCAATGTTCAAGACCGTTACAAAAATGTCATCGCGGTGAAAGATGTTGT 1742
||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1725 TTGGAAGAAAATCAATGTGCAAGACCGTTACAAAAATGTCGTCGCGGTGAAAGATGTTGT 1784
Query 1743 CAGGGTCATTGAGGGTCCTAGCAAAGGTAAACAAGGTCCAGTGGTGCAAATCTACAAAGG 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 CAGGGTCATTGAGGGTCCTAGCAAAGGTAAACAAGGTCCAGTGGTGCAAATCTACAAAGG 1844
Query 1803 AGTGTTGTTTATACATGACCGGCATAACTTTGAACACACTGGATTTATCTGCACTAGATG 1862
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1845 AGTGTTGTTTATACATGACCGGCATAACCTTGAACACACTGGATTTATCTGCACTAGATG 1904
Query 1863 CTCATCTTGTGTTCTTGTTGGTGGCAATTTCAAGACACCAGCCCTGATTCCTCCATCTCC 1922
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1905 CTCATCTTGTGTTCTTGCTGGTGGCAATTTCAAGACACCAGCCCTGGTTCCTCCATCTCC 1964
Query 1923 AAGAAGATTTCAACGGGCAGACATGGGATATAACC--G-AGCTGGAGGGAGACATT-GTG 1978
||| ||||| ||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 1965 AAGGAGATTCCAACGGGCAGACATGGGATATAACCCTGGAGCTGGAGGGAGACATCAG-G 2023
Query 1979 GTGGACGAGGGAGAAGGGGTGACGATCTTTTGGTAGGTACTTATGTGAAAATTCGTATGG 2038
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 2024 GTGGACGAGGGAGAAGGGGTGACGATCATTTGGTAGGTACTTATGTCAAAATTCGTCTGG 2083
Query 2039 GGGCTTTCAAGGGATATAGCGGGCGTTTAGTTGAAGTCAAAGATAAGTTAGTGCGTGTGG 2098
|| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2084 GGCCTTTCAAGGGATATAGTGGGCGTTTAGTTGAAGTCAAAGATAAGCTAGTGCGTGTGG 2143
Query 2099 AACTCGAGGCCAAGATTGTGACAGGCAAGCTCCACTTTGAGCGGAAGGCGATATCAGATA 2158
|||| ||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 2144 AACTTGAGGCCAAGATTGTGACAG------T----T--GAGCGGAAGGCGATATCAGATA 2191
Query 2159 TGACTGATAATGTAGCCACA-CCTTCTCATTATAATATGGGAAGCCAAACTCCTATGCAT 2217
||||||||||||||| | || || | || ||||||||||||||||||||||||||||||
Sbjct 2192 TGACTGATAATGTAGTCGCAACCC-CGCAGTATAATATGGGAAGCCAAACTCCTATGCAT 2250
Query 2218 CCTTCCCGGACTCCACTTCATCCTTGTATGACTCCGATGCGGGATTCTGGAGCTACACCT 2277
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 2251 CCTTCCCGGACTCCACTTCATCCCTGTATGACTCCAATGCGGCATTCTGGAGCTACACCT 2310
Query 2278 ATCCATGATGGAATGAGGACACCTATGCGTGGTAGAGCTTGGAATCCTTACATGCCGATG 2337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2311 ATCCATGATGGAATGAGGACACCTATGCGTGGTAGAGCTTGGAATCCTTACATGCCTATG 2370
Query 2338 AGTCCTCCTAGGGATAACTGGGAAGATGGAAACCCGGGATCATGGGGAACAGGTCCATAT 2397
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2371 AGTCCTCCTAGGGATAACTGGGAAGATGGGAACCCGGGATCATGGGGAACAAGTCCATAT 2430
Query 2398 GAAGCATCTACGCCTGGATCAGGAT-GGGGTAGTAGTACTCCTAGTTGTAGTAGTTACAG 2456
|||||| ||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 2431 GAAGCAGCTACGCCTGGATCAG-ATTGGGGTAGTAGTACTCCTGGTCGTAGTAGTTACAG 2489
Query 2457 TGATGCTGGAACACCAATAAACAATGCTAATGCCCCAAGTCCTATGACACCAAGCTCAGC 2516
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2490 AGATGCCGGAACACCAATAAACAATGCTAATGCCCCAAGTCCTATGACACCAAGCTCAAC 2549
Query 2517 TTCCTACCTACCTACCACACCCGGAGGACAACCAATGACTCCTGGAACCGATCTCGATGT 2576
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2550 TTCCTACTTACCTACCACACCCGGAGGACAAGCAATGACTCCTGGAACCGATCTCGATGT 2609
Query 2577 CATGTCTCATGATTTAGGTGGAGATGCAGAAACAAGGTTTGTGCCTGGTATTTTGGTCAA 2636
|||||||| |||| ||||||||||||||||||| ||||| | || ||||| ||||||||
Sbjct 2610 CATGTCTCTTGATATAGGTGGAGATGCAGAAACCAGGTTCATACCCGGTATATTGGTCAA 2669
Query 2637 CGTACACAAAGCTGGAGAGGATAGTAAA-CCCGGTGTCATCCGAGATGTTCTTCCGGATG 2695
||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||
Sbjct 2670 TGTACACAAAGCTGGAGAGGATAG-AAATCCCGGTGTTATTCGAGATGTTCTTCCGGATG 2728
Query 2696 GCTCATGTGTAGTCGCACTTGGACACAGAGGTGAAGGCGGGACGATAATG-GCGACACAG 2754
|||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 2729 GCTCCTGTGTAGTCGCACTTGGACACAGAGGTGAAGGCGAGACGATAA-GAGCGACACAG 2787
Query 2755 AACAAAGTGAGCCTAGTTTGTCCAAAGAAGAACGAACGTGTGAAGATTCTTGGAGGCAAG 2814
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2788 AACAAAGTGAGCCTAGTTTGTCCGAAGAAGAACGAACGTGTGAAGATTCTTGGAGGCAAG 2847
Query 2815 TATGGTGGTTCAACAGGTAAGGTCATTGGTGAAGACGGATG-GGACAGTATAGTTAAGCT 2873
||| |||||||||||| ||||||||||||||| ||||| | |||| |||||||||||||
Sbjct 2848 TATTGTGGTTCAACAGCTAAGGTCATTGGTGAGGACGG-TCAGGACGGTATAGTTAAGCT 2906
Query 2874 AGATGAAAGTCTCGATGTCAAGATAATGAAGCTGGCTATATTAGCCAAGTTAGTTCATGA 2933
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2907 AGATGAAAGTCTCGATATCAAGATATTGAAGCTGACTATATTAGCCAAGTTAGTTCATGA 2966
Query 2934 GTGA 2937
||||
Sbjct 2967 GTGA 2970
Score = 315 bits (170), Expect = 2e-84
Identities = 207/225 (92%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 23 ATGAGGATGATTCGGAGATGGAGGAGGAGGAGGACGAAGACGAATATGAGCCGAGAAGTA 82
|||| ||||| |||||||||||||| ||||| || |||||||||||||| || |||||||
Sbjct 32 ATGAAGATGACTCGGAGATGGAGGATGAGGACGAAGAAGACGAATATGAACCCAGAAGTA 91
Query 83 GCCGCAAAGGTAGCTCAGGGAAGAAAAGGGGAAGATCAAATTCAGATTCCGATGGTCGGC 142
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GCCGCAAAGGAAGATCAGGGAAGAAAAGGGGAAGATCAAATTCAGATTCCGATGGTCGGC 151
Query 143 GAGGGAGTAAAAAGAAGTCTTCGGGTTCCGCCTTCATTGACTGGGAGGTTGAGGTGGATG 202
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 152 GAGGGAGTAAAAAGAAGTCTTCGGGCTCCGCCTTCATTGACTGGGAGGTTGAGGTAGATG 211
Query 203 ACGACGTAGAAGACGACGACGATGATGTTGAAGATGATA-ACGGT 246
||||||| ||||||||||| |||||||| || | ||| | |||||
Sbjct 212 ACGACGTCGAAGACGACGATGATGATGTGGACGTTGA-AGACGGT 255
> AT4G08350.1 | Symbols: GTA02, GTA2 | global transcription factor
group A2 | chr4:5286234-5292239 FORWARD LENGTH=3410
Length=3410
Score = 1520 bits (823), Expect = 0.0
Identities = 1260/1472 (86%), Gaps = 26/1472 (2%)
Strand=Plus/Plus
Query 428 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGCGACCCGAAATTGTGGTTGGTCAAATGTG 487
||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||||
Sbjct 626 TTGAGCAACAAGCGCTTTTGCCATCAGTCCGTGATCCGAAATTGTGGATGGTGAAATGTG 685
Query 488 CGATTGGCCGTGAAAGAGAAGTTGCTGTTTGTCTTATGCAAAAAATCATAGATAGAGGAT 547
|||||||||||||||| || |||||||||||||||||||||||| | |||||| |||||
Sbjct 686 CGATTGGCCGTGAAAGGGAGGTTGCTGTTTGTCTTATGCAAAAATTTATAGATCGAGGAG 745
Query 548 CAGAGTT-CAAGATTAGATCTGCTATTGCCCTTGATCATCTTCAA-AACTATGTATACAT 605
| || || || ||||||||||| | |||||||||| |||||| || || | | |||| |
Sbjct 746 CTGATTTGCA-GATTAGATCTGTTGTTGCCCTTGACCATCTT-AAGAATTTTATATATGT 803
Query 606 TGAAGCGGATATGGAAGCTCATGTGAAAGAGGCTATCAAGGGCATGCGGAATATTTATGC 665
|||||| || | ||||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 804 TGAAGCAGACAAGGAAGCTCATGTGAAAGAGGCAATCAAGGGCATGAGGAATATATATGC 863
Query 666 TAATCAGAAGATTTTACTTGTCCCCATAAAAGAAATGACAGATGTTCTTTCTGTTGAAAG 725
|||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 864 TAATCAGAAGATCTTACTTGTCCCGATAAGAGAAATGACAGATGTTCTTTCTGTTGAGAG 923
Query 726 TAAAGCAATCGATCTATCCCGTGATACATGGGTTAGAATGAAACTTGGGATATATAAGGG 785
||||| || |||||||| || ||||| ||||||||||||||| | |||| ||||| ||
Sbjct 924 CAAAGCCATTGATCTATCACGGGATACCTGGGTTAGAATGAAAATCGGGACGTATAAAGG 983
Query 786 TGATCTAGCTCAGGTGGTTGATGTTGATAATGTGCGTAAGAGGGTCACAGTCAAGTTGAT 845
|||||| || |||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 984 TGATCTTGCAAAGGTAGTTGATGTTGATAATGTGCGTCAGAGGGTCACAGTCAAGTTAAT 1043
Query 846 CCCAAGAATTGATCTGCAGGCTCTAGCCAATAAGCTGGAAGGAAGAGAGAATGTCAA-GA 904
||||||||||||||||||||| ||||||| ||||||||| |||||||| | | |||| ||
Sbjct 1044 CCCAAGAATTGATCTGCAGGCACTAGCCAGTAAGCTGGACGGAAGAGA-AGTTTCAAAGA 1102
Query 905 AGAAAGCTTTTGCTCCACCTCCACGTTTCATGAACATTGATGAGGCAAGGGAACTTCACA 964
| ||||| |||| |||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1103 AAAAAGCCTTTGTTCCACCTCCACGTTTCATGAACATTGATGAAGCGAGGGAACTGCACA 1162
Query 965 TACGTGTTGAGCACCGGCGTGATC-CAATGACGGGTGACCCCTTTGAGAATATCGATGGT 1023
|||||||||||| |||||||||| || |||| ||||| |||||| ||||| | |||
Sbjct 1163 TACGTGTTGAGCGTCGGCGTGATCACA-TGACTGGTGATTACTTTGAAAATATTGGTGGC 1221
Query 1024 ATGCTTTTCAAAGATGGTTTTCTTTACAAGA-AAGTATCGAC-GAAGTCAATTGCTGCTC 1081
||||||||||||||||| |||| |||||| | ||||||| | |||||| || ||| ||
Sbjct 1222 ATGCTTTTCAAAGATGGGTTTCATTACAA-ACAAGTATC-ATTGAAGTCCATCACTGTTC 1279
Query 1082 AGAATATTACACCAACCTTCGATGAACTTGAAAGATTCAAGAGACCAAATGAAAATGGGG 1141
||||| |||||||||| || || |||||||||| |||||| | ||||| ||||||||| |
Sbjct 1280 AGAATGTTACACCAACTTTTGACGAACTTGAAAAATTCAATAAACCAAGTGAAAATGGAG 1339
Query 1142 AGATCGACTTCGTTGATCCCTCCACTTTATTTGCAAATAGAAAGAAGGGTCATTTCATGA 1201
|| |||||| | || || || || ||||||||||| |||||||| |||||||||||||
Sbjct 1340 AGGGCGACTTTGGTGGTCTGTCAACATTATTTGCAAACAGAAAGAAAGGTCATTTCATGA 1399
Query 1202 AAGGTGATGCGGTTATTGTTATCAAGGGGGATCTTATAAACTTAAAGGGTTGGATTGAGA 1261
| |||||||| ||||||||||||||||||||||| | |||||| ||||||||| ||||||
Sbjct 1400 AGGGTGATGCAGTTATTGTTATCAAGGGGGATCTGAAAAACTTGAAGGGTTGGGTTGAGA 1459
Query 1262 AAGTAGATGAAGAGAATGTTCTTATCAGATC-GAATATGAAAGGTCTTCCTAATCCTATT 1320
||||||||||||| ||||| ||||||||||| ||| |||||||||| ||| ||||| ||
Sbjct 1460 AAGTAGATGAAGAAAATGTCCTTATCAGATCAGAAG-TGAAAGGTCTCCCTGATCCTCTT 1518
Query 1321 GCGGTAAATGAGAGAGAGCTTTGCAAATACTTTGAACCTGGAAATTTTGTGAAGGTTGTG 1380
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1519 GCTGTAAATGAGAGAGAGCTTTGCAAGTACTTTGAACCTGGAAATCATGTGAAGGTTGTC 1578
Query 1381 TCTGGCATCCATGAAGGAGGAACTGGCATGATTGTCAAAGTTGATCAGCATATGCTTATC 1440
||||| | ||||||||||| ||| |||||| |||||||||||||||| || ||||||||
Sbjct 1579 TCTGGGACCCATGAAGGAGCAACAGGCATGGTTGTCAAAGTTGATCAACACGTGCTTATC 1638
Query 1441 ATTCTGTCTGATACAACCAAAGAACATATTCGCGTCTTCGCTGATCATGTCGCCAAGAGT 1500
||||||||||| || |||||||||||| | || || || ||||||||||| | |||||
Sbjct 1639 ATTCTGTCTGACACGACCAAAGAACATGTCCGAGTGTTTGCTGATCATGTTGTTGAGAGT 1698
Query 1501 GCAGAAGTGACTAA-TGCTGTCACAAAAATTGGAGACTATGAACTTCATGATCTTGTGAT 1559
|||||||||| || || ||| || |||||||| |||||||||||||||||||||||| |
Sbjct 1699 TCAGAAGTGAC-AACTGGTGTTACCAAAATTGGGGACTATGAACTTCATGATCTTGTGCT 1757
Query 1560 TCTA-AGTGACTTGAGCTTTGGAGTAATCATAAAACTTGATAGTGAAGCTATCCAGATTC 1618
||| | | || |||||||||||||||| ||| ||| || | ||||||| | ||| |||
Sbjct 1758 TCTGGA-TAACCTGAGCTTTGGAGTAATTATACGACTAGAGAATGAAGCTTTTCAGGTTC 1816
Query 1619 TTAAAGGGGTTCCTGACAG-CTCAGAGGTCT-CTATTGTCAAAGC-CAGCGAAATAAAAT 1675
||||||||||||||||||| | ||||||| | || |||||||| | ||| ||||| ||||
Sbjct 1817 TTAAAGGGGTTCCTGACAGAC-CAGAGGT-TGCTCTTGTCAAA-CTCAGAGAAATCAAAT 1873
Query 1676 ACAAAATTTG-GAAGAAAAGCAATGTTCAAGACCGTTACAAAAATGTCATCGCGGTGAAA 1734
|||| || | |||||||| |||||||||||| || |||||||||||||| || ||||||
Sbjct 1874 GCAAACTT-GAGAAGAAAATCAATGTTCAAGATCGCTACAAAAATGTCATTGCTGTGAAA 1932
Query 1735 GATGTTGTCAGGGTCATTGAGGGTCCTAGCAAAGGTAAACAAGGTCCAGTGGTGCAAATC 1794
|||| ||||| || || ||||||||||||||||||||||||||||| || ||| |||
Sbjct 1933 GATGACGTCAGAGTGATCGAGGGTCCTAGCAAAGGTAAACAAGGTCCTGTAAAGCATATC 1992
Query 1795 TACAAAGGAGTGTTGTTTATACATGACCGGCATAACTTTGAACACACTGGATTTATCTGC 1854
||||||||||| || |||||| |||| || ||| || |||| || ||||||||||||||
Sbjct 1993 TACAAAGGAGTCTTATTTATATATGATCGACATCACCTTGAGCATGCTGGATTTATCTGC 2052
Query 1855 ACTAGATGCTCATCTTGTGTTCTTGTTGGTGG 1886
||| |||| |||| || || ||||||||||
Sbjct 2053 GCTAAATGCACATCATGCATTGTTGTTGGTGG 2084
Score = 189 bits (102), Expect = 1e-46
Identities = 329/436 (75%), Gaps = 25/436 (6%)
Strand=Plus/Plus
Query 2500 ATGACACCAAGCTCAGCTTCCTACCTACCTACCACACCCGGAGGACAACCAATGACTCCT 2559
|||||||||||||| ||||| ||| ||||| || ||||||||||||||||||||||||
Sbjct 2809 ATGACACCAAGCTCGGCTTCATACTTACCTGGTACTCCCGGAGGACAACCAATGACTCCT 2868
Query 2560 GGAACCGATCTCGATGTCATGTCTCATGATT-TAGGTGGAGATGCAGAAACAAGGTTTGT 2618
||||| | |||||||||||||||| || || ||||||| ||||| ||| || |||| |
Sbjct 2869 GGAACTGGCCTCGATGTCATGTCTCCTG-TTATAGGTGGGGATGCTGAAGCATGGTTCAT 2927
Query 2619 GCCTGGTATTTTGGTCAACGTACACAAAGCTGGAGAGGATAGTAAACCCGGTGTCATCCG 2678
||| | ||||||||| || ||||||| ||||||||||| | | || ||||||||
Sbjct 2928 GCCCGATATTTTGGTTGACATACACAAGGCTGGAGAGGACACCGATGTGGGCGTCATCCG 2987
Query 2679 AGATGTTCTTCCGGATGGCTCATGTGTAGTCG-CACTTGGA-CACAGAGGTGAAGGCGGG 2736
||||||| | | |||||| | ||| ||| | | || || | ||| |||||||| |
Sbjct 2988 AGATGTT-T-C-GGATGGAACGTGTAAAGT-GTCTCTCGGGTC-CAGCGGTGAAGGTGAC 3042
Query 2737 ACGATAATGGCGACACAGAA-CAAAGTG-AGCCTAGTTTGTCCAAAGAAGAAC-GAACGT 2793
|| |||||||| | | || | || || || || || ||| | ||| | | || |||
Sbjct 3043 ACTATAATGGCC-CTCCCAAGCGAACTGGAGA-TAATTCCTCCGAGGAA-ATCCGATCGT 3099
Query 2794 GTGAAGATTCTTGGAGG-CAAGTATGGTGGTTCAACAGGTAAGGTCATTGGTGAA--GAC 2850
|| || || |||| || || |||| |||| || ||||||||| | || || || |||
Sbjct 3100 GTCAAAATAGTTGGCGGTCA-GTATCGTGGGTCTACAGGTAAGCTGATCGG--AATCGAC 3156
Query 2851 GGATGGGACAGTATAGTTAAGCTAGATGA-AAGTCTCGATGTCAAGATAATGAAGCTGGC 2909
|| | ||| |||| |||||| ||||||| || ||| || |||||||| || | |||||
Sbjct 3157 GGGTCTGACGGTATCGTTAAGATAGATGATAA-TCTTGACGTCAAGATTCTGGACCTGGC 3215
Query 2910 -TATATTAGCCAAGTT 2924
| |||||||||||||
Sbjct 3216 CT-TATTAGCCAAGTT 3230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145985804130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5