BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482367
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34250.1 | Symbols: | SecY protein transport family protein... 3081 0.0
AT1G29310.1 | Symbols: | SecY protein transport family protein... 1738 0.0
> AT2G34250.1 | Symbols: | SecY protein transport family protein
| chr2:14462059-14464862 FORWARD LENGTH=1912
Length=1912
Score = 3081 bits (1668), Expect = 0.0
Identities = 1834/1910 (96%), Gaps = 28/1910 (1%)
Strand=Plus/Plus
Query 1 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATC-AAAACTACAACGCTCTT 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 18 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATCAAAAACTACAACGCTCTT 77
Query 60 TCTCCGTAGGAAAGGGGAACGCAAATAAATAAAATTATCGAAG-CCATTGGTTTCGGAGC 118
||||||||||||||||||| || |||| |||||||||||| ||| ||||||||||||
Sbjct 78 TCTCCGTAGGAAAGGGGAA-GC----AAAT-AAATTATCGAAGCCCACTGGTTTCGGAGC 131
Query 119 TGATCGGTCTCTATTTCTCTCGT-A-AGCTTCTCCTCAAGCAGATAAACTTGATCGGATA 176
||||||||||||||||||||| | | | | | | |||||||||||||| |||||||||||
Sbjct 132 TGATCGGTCTCTATTTCTCTCTTCATA-CATAT-CTCAAGCAGATAAAGTTGATCGGATA 189
Query 177 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTT-GCGTTTT-T 234
|||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
Sbjct 190 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATT-CTTGGC-TTTTCT 247
Query 235 GCCTGAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGT 294
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 248 GCCTGAGGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGT 307
Query 295 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 367
Query 355 GACTGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 414
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CACCGGTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 427
Query 415 CATGGAGCTTGGTATTACTCCTATTGTCACATCTGGACTTGTGATGCAACTCTTGGCTGG 474
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 428 CATGGAGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGG 487
Query 475 TTCCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGC 534
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 488 TTCCAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGC 547
Query 535 TCAGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 594
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 548 TCAGAAGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 607
Query 595 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCT 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 608 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCT 667
Query 655 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCT 714
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 668 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCT 727
Query 715 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGC 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 728 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGC 787
Query 775 ATTTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGC 834
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 788 ATTTAGCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGC 847
Query 835 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 907
Query 895 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 967
Query 955 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1027
Query 1015 ACAGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATC 1074
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1028 ACAGGGTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATC 1087
Query 1075 CGCTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAA 1134
||| || |||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1088 CGCCCTCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAA 1147
Query 1135 TTTCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCC 1194
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1148 TTTCTTTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCC 1207
Query 1195 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCTCTGACATGGCAGCTCA 1254
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1208 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCTCTGACATGGCAGCTCA 1267
Query 1255 CCCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1314
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1268 CCCGTTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1327
Query 1315 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1387
Query 1375 ACAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATAT 1434
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct 1388 ACAAATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACAT 1447
Query 1435 CCCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTT 1494
||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||
Sbjct 1448 CCCAACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTT 1507
Query 1495 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1567
Query 1555 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCTAAGTTAG 1614
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1568 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCTAAGTTAG 1627
Query 1615 CTTAAAGAAGGTGTAAAACTTTGC-TGAGACAAAAA-GCAGAGCAGAAGAGGCTTTAGCT 1672
||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1628 CTTAAAGAAGGTGTAAA-CTTTGCCTGAGGCAAAAAAGCAGAGCAGAAGAGGCTTTAGCT 1686
Query 1673 TCTGTGCCCACCTCAAACA--GACAATTTGTGGTGGCACTTTGGGGTAGACTACtttttt 1730
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 1687 TCTGTGCCCACCTCAAACACAGACAATTTGTGGTGGCACTT-GGGTTAGACTACTTTTTT 1745
Query 1731 tttttgttgttcaaacgaaattttcgctttagtcatttatgtttttttgttacttttaA- 1789
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1746 TTGTTGTTGTTGAAACGAAATTTTCTCTTTAGTCATTTATGTTTTTTTGTTACTTTTTAC 1805
Query 1790 AAGTTAAGAAAAACTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1849
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 AAGTTAA-AAAA-CTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1863
Query 1850 CTT-GACC-AGAATAAACAATTTTACAGTTTTGAATTCAAAGCAATTTAT 1897
||| |||| | ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1864 CTTTGACCCA-AATAAACAAATTTACAGTTTTGAATACAAAGCAATTTAT 1912
> AT1G29310.1 | Symbols: | SecY protein transport family protein
| chr1:10252294-10254690 FORWARD LENGTH=1700
Length=1700
Score = 1738 bits (941), Expect = 0.0
Identities = 1272/1434 (89%), Gaps = 14/1434 (1%)
Strand=Plus/Plus
Query 181 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTTG-CGTTT-TTGCCT 238
||||||||||||||||||||||||||||||||||||||||||| ||| | ||| || ||
Sbjct 108 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTC-TTGGCTTTTCTT-CCA 165
Query 239 GAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGTCATC 298
|| || || ||||||||||||||| | ||||| |||||||| || |||||||||||||||
Sbjct 166 GAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATC 225
Query 299 TCTCTCTTCATCTTTC-TTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACGAC 357
|| |||||||| |||| |||| || |||||||||||||| ||||| |||||||| || ||
Sbjct 226 TCCCTCTTCAT-TTTCCTTGTTTGTAGTCAGCTTCCTCTCTATGGGATCCATTCTACCAC 284
Query 358 TGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCAT 417
||||||||||| ||||||||||||||||||||||| || || || |||||||| || ||
Sbjct 285 CGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTCGCATCGAATCGTGGAACGGTGAT 344
Query 418 GGAGCTTGGTATTACTCCTATTGTCACATCTGGACTT-GTGATGCAACTCTTGGCTGGTT 476
|||||||||||||||||||||||||||||||||| || |||||||||||||| || || |
Sbjct 345 GGAGCTTGGTATTACTCCTATTGTCACATCTGGA-TTAGTGATGCAACTCTTAGCAGGGT 403
Query 477 CCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGCTC 536
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 404 CAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCTCTCTTGAATGGTGCTC 463
Query 537 AGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAA 596
|||||||||| || |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 464 AGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCATATGTTCTTTCGGGAA 523
Query 597 TGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCTTT 656
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 524 TGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTT 583
Query 657 TCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCTCG 716
|||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||| |
Sbjct 584 TCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTG 643
Query 717 GATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGCAT 776
| || |||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||
Sbjct 644 GCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTGTGAAAGCATTATCTGGAAAGCAT 703
Query 777 TTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGCAC 836
||||||| || || ||||||||||| |||||||||||||||||||| || || |||||
Sbjct 704 TTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATTGCGT 763
Query 837 TGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACC 896
||||||||||||||||||| |||||||| |||||||| || ||| | |||||||| ||||
Sbjct 764 TGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACC 823
Query 897 GGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGA 956
|||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |
Sbjct 824 GGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTGTTGATCTTCTTGATTGTTA 883
Query 957 TCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAAC 1016
| ||||||||||| |||||||| || ||||| ||||| ||||||| ||| ||||| ||||
Sbjct 884 TATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAAC 943
Query 1017 AGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATCCG 1076
||||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||||| || |
Sbjct 944 AGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTG 1003
Query 1077 CTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAATT 1136
|||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1004 CTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAATTCAGTGGAAATT 1063
Query 1137 TCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCCAG 1196
||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 1064 TCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAG 1123
Query 1197 TTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCT-CTGACATGGCAGCTCAC 1255
|||||||||| || || | ||||||||||| ||||| || | | || |||||||||||
Sbjct 1124 TTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAGTTT-TGCCGATATGGCAGCTCAT 1182
Query 1256 CCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAG 1315
|| |||||||| |||||||| || ||||||||||||||||||||||| || ||||||||
Sbjct 1183 CCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCACTGCTTGTGCCCTATTCTCAAAA 1242
Query 1316 ACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAA 1375
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1243 ACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTAAAGGAACAA 1302
Query 1376 CAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATATC 1435
|||||||||||||| |||||||||||||| ||||| || ||||| |||||| |||| |||
Sbjct 1303 CAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACAAAAGGAGCTGAACCGGTACATC 1362
Query 1436 CCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTTC 1495
|||||||| || || |||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct 1363 CCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGCGCTCACTGTTTTGGCTGATTTC 1422
Query 1496 ATGGGAGCCATCGGGTCGGGAACCGGAATTCTG--TTGGCGGTCACGATCATATACCAGT 1553
||||||||||| |||||||| || ||||| || ||| | ||||| |||||||| ||||
Sbjct 1423 ATGGGAGCCATTGGGTCGGGGACTGGAAT-CTTACTTG-CAGTCACAATCATATATCAGT 1480
Query 1554 ATTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCT 1607
|||| || ||||||||||||||||||||||| ||||| || ||||| || ||||
Sbjct 1481 ATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGTTTCTTTGGATTCT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93925219695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5