BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482373

Length=1049
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1134    0.0  


> AT2G34310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 
plant structures; EXPRESSED DURING: 13 growth stages; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); 
Has 1236 Blast hits to 680 proteins in 89 species: 
Archae - 0; Bacteria - 0; Metazoa - 473; Fungi - 0; Plants 
- 332; Viruses - 0; Other Eukaryotes - 431 (source: NCBI 
BLink). | chr2:14477745-14479962 REVERSE LENGTH=1254
Length=1254

 Score = 1134 bits (614),  Expect = 0.0
 Identities = 703/746 (94%), Gaps = 5/746 (1%)
 Strand=Plus/Plus

Query  100  AATCCATTGATCATGCCTCCTGGTGCCAAAAAGAGAAAGGCTTTGAAGAAGAAGCAGCAG  159
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  AATCCATTGATCATGCCGCCTGGTGCCAAAAAGAGAAAGGCTTTGAAGAAGAAGCAGCAG  198

Query  160  GAGCAGGAAGCCGCTGGAGCCGGTACTAACAACAAAGGCTTCAATGGTGATGGACATGAT  219
            |||||||||||| |||||| || ||| ||||||||||||||||||||| |||||||||||
Sbjct  199  GAGCAGGAAGCCACTGGAGTCGCTACCAACAACAAAGGCTTCAATGGTCATGGACATGAT  258

Query  220  GAACATGGAAGCCAAGATGAGAGAGACAGTGATGGCAATTTGAGTTCCCCTGGTTCTCAA  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  259  GAACATGGAAGCCAAGATGAGAGAGACAGTGATGGCAATTTGAGTTCCCCTGGATCTCAA  318

Query  280  GGAAATGAAGAATTTGGGACAATAGACT-CATCACCTCCTCCATTATCTGGTTTAGGGAA  338
            |||||||||||||||||||| | ||| | |||||||||||||||||||| ||||||||||
Sbjct  319  GGAAATGAAGAATTTGGGACTAGAGA-TCCATCACCTCCTCCATTATCTAGTTTAGGGAA  377

Query  339  GGACATTGTTAAAGAGAAAGCAGAAGATGCTGACTTTACTCGGGGACAAGTAGCGAAAGG  398
             ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  378  AGACATTGTTAAAGAGAAAGCAGAAGATGCAGACTTTACTGGGGGACAAGTAGCGAAAGG  437

Query  399  TGAAGACGTTATTGCAGTTGGAAGA-G--GAACGGATCATGAGGAGAACGGTGTGGACAA  455
            |||||||||||||| |||||||||| |  |||||||||| |||||||| |||||  ||||
Sbjct  438  TGAAGACGTTATTGAAGTTGGAAGAGGAAGAACGGATCACGAGGAGAATGGTGTAAACAA  497

Query  456  ACAACCCAATTCCTGTCCTGATAATTTTACTCAAACTTCTAGAGAGGCTGATAGTACTTC  515
            ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  498  ACAACTCAATTCCTGTCCTGAAAATTTTACTCAAACTTCTAGAGAGGCTGATAGTACTTC  557

Query  516  AAGTTTGGAAATTTCACCTGCTCTTGATTCTGTCAAGCCTGTGGGTTCTTCTGTCTCAAA  575
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  558  AAGTTTGGAAATTTCACCTGCTCTTGATTCTGTCAAGCCTATGGGTTCTTCTGTCTCAAA  617

Query  576  GGTTGTGATGTCTGACAAAAATGAGCAAGTTGAGAGCTCAACAGTCTTGGATTCTCTCCA  635
             ||||||||||||||||||| | ||||||||||||| || || | || ||||||||||||
Sbjct  618  AGTTGTGATGTCTGACAAAAGTAAGCAAGTTGAGAGTTCGACGGACTCGGATTCTCTCCA  677

Query  636  ACAGAAGTCTGATGAAAACGAAGAGAACCTTAGTCCAGGATCTACTGAGGAAACTAACAA  695
            |||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||||
Sbjct  678  ACAGAAGTCTGATGAAAAGGAAGAGATCCTTAGTCCAAGATCTGCTGAGGAAACTAACAA  737

Query  696  AGAAGTCAAGAATGTGAAAGAAAATGAAGTGCCAGAATGTTCTAAAGAAAAGAGTCTTTT  755
            |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  738  AGAAATCAAGAATGTGAAAGAATATGAAGTGCCAGAATGTTCTAAAGAAAAGAGTCTTTT  797

Query  756  GCCTTCTGGTCCACCAGTTGTTCGAACCTCGTGGTTGAGTTGCTGCGGTTTGTTTGATGT  815
            ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct  798  GCCTTCTGGTCCACCAGTTTTTCGAACGTCGTGGTTGAGTTGCTGCGGTTTGTTTGATGT  857

Query  816  AATGGCAGGATCTGAAAGATAAGTAC  841
            |||||||||||||||||||||| |||
Sbjct  858  AATGGCAGGATCTGAAAGATAAATAC  883


 Score =  148 bits (80),  Expect = 8e-35
 Identities = 88/92 (96%), Gaps = 0/92 (0%)
 Strand=Plus/Plus

Query  844   GAGGAGGATAAAATAGCAAATAGTGAACAGCAGAAGCTCAAAGAACAGCCGACAAAACAG  903
             |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| 
Sbjct  1014  GAGGAGGATAAAATTGCAAACAGTGAACAGCAGAAGCTCAAAGAACAGCCGACAATACAT  1073

Query  904   GATTCATGGTCTGTAGATTCTTCTCTGTACAA  935
             ||||||||||||||||||||||||||||||||
Sbjct  1074  GATTCATGGTCTGTAGATTCTTCTCTGTACAA  1105


 Score = 97.1 bits (52),  Expect = 3e-19
 Identities = 67/74 (91%), Gaps = 2/74 (3%)
 Strand=Plus/Plus

Query  27  AAGGAGA-AACTCAACTCCACCCACATCACACAAACCAACAAACCCACAAGCTCCAGATA  85
           ||||||| ||  |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  1   AAGGAGAGAA-ACAACTCCACCCACATCACACAAACCAACAAACCCACAAGCTCCATAAA  59

Query  86  TCTTTGGAGTGAAC  99
           |||||  |||||||
Sbjct  60  TCTTTCAAGTGAAC  73



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51439766528


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5