BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482376
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 774 0.0
> AT2G34330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G29540.1);
Has 10 Blast hits to 10 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14486539-14487401
FORWARD LENGTH=863
Length=863
Score = 774 bits (419), Expect = 0.0
Identities = 479/506 (95%), Gaps = 12/506 (2%)
Strand=Plus/Plus
Query 1 TCTGTCT-CTTTTCTCTTCTTACATTCTCTCTGTTATTTGCT--AAAGAGAGGAAAACAA 57
||||||| ||| | |||||||||||||||||| || ||| || ||| ||||||||||||
Sbjct 25 TCTGTCTCCTTCT-TCTTCTTACATTCTCTCT-TT-TTTTCTACAAACAGAGGAAAACAA 81
Query 58 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCAAGAGATGAGGGGGGCTGAGTCGTTAGTTACCTTAAACCACAAGATTCTCAGACCATG 141
Query 118 TAGGAAACTCCTGATCAGAATCACCAAGAGTTGTCCCCGACGTCATAACCGGCATTTGAA 177
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 142 TAGGAAACTCCTGATCAGAATCACCAAGAGCTGTCCCCGACGCCATAACCGGCATTTAAA 201
Query 178 ACTCAAGAAAGCCTCTTCTTCTTCTACTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 202 ACTCAAGAAAGCCTCTTCTTCTTCTTCTACTGCTTCAGGGAACAAGGTCACCAAAGTGGT 261
Query 238 GGCTTTGTTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GGCTTTATTCTTCCTCTCCTTCCATAAGAAGAAGCAGAAGAAAGAAAAGATGAAGCGGCT 321
Query 298 CAACGAACTCAGGAGCTTCTCTCACGCAGTCAGTGACCAGAAGAAG--GTC-CCAAAGCA 354
|||||||||||||||||||| |||||||||| ||||||||||||| | | ||||||||
Sbjct 322 TAACGAACTCAGGAGCTTCTCGCACGCAGTCAATGACCAGAAGAAGAAGGCACCAAAGCA 381
Query 355 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGCCAAGGAAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 382 AGAATCAAGCAAGAAAGTTTTCCCATCAAGACTCACAATGTCTTGGCTAGGTCAAGGAAA 441
Query 415 GGGTAA---CAACAACACGCAGGAAGTCCCGCAAGAACACGATGCACGTAGAGACAGCAC 471
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 442 GGGTAATAACAACAACACGCAGGAAGTCCCTCAAGAACATGATGCACGTAGAGACAGCAC 501
Query 472 AAGCGCATTCATTCCTTGATTTTCAA 497
||||||||||||||||||||||||||
Sbjct 502 AAGCGCATTCATTCCTTGATTTTCAA 527
Score = 189 bits (102), Expect = 3e-47
Identities = 141/158 (89%), Gaps = 10/158 (6%)
Strand=Plus/Plus
Query 600 TTTGCAT-TG-TGTTTGTAATGGAGTTAACATATAATATTAG-A--ATCATC--AAGAAA 652
||||||| || | |||||||||||||||| |||||||||||| | |||||| || |||
Sbjct 700 TTTGCATATGATTTTTGTAATGGAGTTAA-ATATAATATTAGAATCATCATCAAAATAAA 758
Query 653 CGATTGTAATATCAAGAATCCAAATAATATCGAAAACAGAGAAAGAGAAGAAGATAGACA 712
|||||||||||||||||||||||||||||| | ||||||| || || |||||||||||||
Sbjct 759 CGATTGTAATATCAAGAATCCAAATAATATAGGAAACAGA-AA-GATAAGAAGATAGACA 816
Query 713 TTGAAATTTTATACATCTATCCTAAAAGCACGGACCAA 750
|||||| ||||||||||||||||| |||||||||||||
Sbjct 817 TTGAAAATTTATACATCTATCCTACAAGCACGGACCAA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5